Stefan Washietl
Stefan Washietl
Computer Science and Artificial Intelligence Lab, MIT
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Citado por
Citado por
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
Fast and reliable prediction of noncoding RNAs
S Washietl, IL Hofacker, PF Stadler
Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
S Rouskin, M Zubradt, S Washietl, M Kellis, JS Weissman
Nature 505 (7485), 701-705, 2014
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler
Nature biotechnology 23 (11), 1383-1390, 2005
A benchmark of multiple sequence alignment programs upon structural RNAs
PP Gardner, A Wilm, S Washietl
Nucleic acids research 33 (8), 2433-2439, 2005
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
S Washietl, M Kellis, M Garber
Genome research 24 (4), 616-628, 2014
RNAz 2.0: improved noncoding RNA detection
AR Gruber, S Findeiß, S Washietl, IL Hofacker, PF Stadler
Biocomputing 2010, 69-79, 2010
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
PWC Hsu, HD Huang, SD Hsu, LZ Lin, AP Tsou, CP Tseng, PF Stadler, ...
Nucleic acids research 34 (suppl_1), D135-D139, 2006
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
Oviduct: roles in fertilization and early embryo development
S Li, W Winuthayanon
J Endocrinol 232 (1), R1-R26, 2017
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics
S Washietl, IL Hofacker
Journal of molecular biology 342 (1), 19-30, 2004
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
S Washietl, S Findeiß, SA Müller, S Kalkhof, M Von Bergen, IL Hofacker, ...
Rna 17 (4), 578-594, 2011
Protein prenyltransferases
S Maurer-Stroh, S Washietl, F Eisenhaber
Genome biology 4 (4), 1-9, 2003
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
S Washietl, IL Hofacker, PF Stadler, M Kellis
Nucleic acids research 40 (10), 4261-4272, 2012
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
BJ Parker, I Moltke, A Roth, S Washietl, J Wen, M Kellis, R Breaker, ...
Genome research 21 (11), 1929-1943, 2011
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
AR Gruber, R Neuböck, IL Hofacker, S Washietl
Nucleic acids research 35 (suppl_2), W335-W338, 2007
Evolutionary patterns of non-coding RNAs
AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ...
Theory in Biosciences 123 (4), 301-369, 2005
RNAs everywhere: genome‐wide annotation of structured RNAs
R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007
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