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Sudipto Mukherjee
Sudipto Mukherjee
Unknown affiliation
Verified email at temple.edu
Title
Cited by
Cited by
Year
DOCK 6: Combining techniques to model RNA–small molecule complexes
PT Lang, SR Brozell, S Mukherjee, EF Pettersen, EC Meng, V Thomas, ...
Rna 15 (6), 1219-1230, 2009
8202009
DOCK 6: Impact of new features and current docking performance
WJ Allen, TE Balius, S Mukherjee, SR Brozell, DT Moustakas, PT Lang, ...
Journal of computational chemistry 36 (15), 1132-1156, 2015
6952015
Docking validation resources: protein family and ligand flexibility experiments
S Mukherjee, TE Balius, RC Rizzo
Journal of chemical information and modeling 50 (11), 1986-2000, 2010
2012010
Evaluation of DOCK 6 as a pose generation and database enrichment tool
SR Brozell, S Mukherjee, TE Balius, DR Roe, DA Case, RC Rizzo
Journal of computer-aided molecular design 26, 749-773, 2012
1732012
Bridging microscopic and macroscopic mechanisms of p53-MDM2 binding with kinetic network models
G Zhou, GA Pantelopulos, S Mukherjee, VA Voelz
Biophysical journal 113 (4), 785-793, 2017
892017
Implementation and evaluation of a docking‐rescoring method using molecular footprint comparisons
TE Balius, S Mukherjee, RC Rizzo
Journal of computational chemistry 32 (10), 2273-2289, 2011
812011
Insights into peptoid helix folding cooperativity from an improved backbone potential
S Mukherjee, G Zhou, C Michel, VA Voelz
The Journal of Physical Chemistry B 119 (50), 15407-15417, 2015
442015
Origins of resistance to the HIVgp41 viral entry inhibitor T20
BE McGillick, TE Balius, S Mukherjee, RC Rizzo
Biochemistry 49 (17), 3575-3592, 2010
412010
Grid‐based molecular footprint comparison method for docking and de novo design: Application to HIVgp41
TE Balius, WJ Allen, S Mukherjee, RC Rizzo
Journal of computational chemistry 34 (14), 1226-1240, 2013
382013
Microsecond simulations of mdm2 and its complex with p53 yield insight into force field accuracy and conformational dynamics
GA Pantelopulos, S Mukherjee, VA Voelz
Proteins: Structure, Function, and Bioinformatics 83 (9), 1665-1676, 2015
312015
Precisely tuneable energy transfer system using peptoid helix-based molecular scaffold
B Kang, W Yang, S Lee, S Mukherjee, J Forstater, H Kim, B Goh, TY Kim, ...
Scientific reports 7 (1), 4786, 2017
292017
Markov models of the apo-MDM2 lid region reveal diffuse yet two-state binding dynamics and receptor poses for computational docking
S Mukherjee, GA Pantelopulos, VA Voelz
Scientific reports 6 (1), 31631, 2016
242016
Dock 6.7 users manual
PT Lang, D Moustakas, S Brozell, N Carrascal, S Mukherjee, S Pegg, ...
The Official UCSF DOCK Web-Site. Fev, 2015
182015
DOCK 6.1, University of California, San Francisco
PT Lang, D Moustakas, S Brozell, N Carrascal, S Mukherjee, S Pegg, ...
92007
DOCK 6.9 users manual
WJ Allen, T Balius, S Brozell, B Fochtman, L Jiang, TD McGee Jr, I Kuntz
University of California, California 27, 2018
52018
Algorithmic improvements and development for DOCK6. 4
S Mukherjee, TE Balius, RC Rizzo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241, 2011
12011
Improved backbone parameters for peptoid modeling
S Mukherjee, VA Voelz
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 248, 2014
2014
Implementation and evaluation of a multi-grid scoring function for structure-based design
WJ Allen, TE Balius, S Mukherjee, RC Rizzo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 247, 2014
2014
Development of a multiple receptor docking protocol to account for sequence and conformational variability in DOCK
BC Fochtman, TE Balius, S Mukherjee, PM Holden, RC Rizzo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 244, 2012
2012
Docking platform and validation resources for structure-based drug design
S Mukherjee
State University of New York at Stony Brook, 2012
2012
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Articles 1–20