Well-tempered metadynamics converges asymptotically JF Dama, M Parrinello, GA Voth Physical review letters 112 (24), 240602, 2014 | 176 | 2014 |

The theory of ultra-coarse-graining. 1. General principles JF Dama, AV Sinitskiy, M McCullagh, J Weare, B Roux, AR Dinner, ... Journal of chemical theory and computation 9 (5), 2466-2480, 2013 | 115 | 2013 |

Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly JMA Grime, JF Dama, BK Ganser-Pornillos, CL Woodward, GJ Jensen, ... Nature communications 7 (1), 1-11, 2016 | 73 | 2016 |

Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence A Davtyan, JF Dama, GA Voth, HC Andersen The Journal of Chemical Physics 142 (15), 154104, 2015 | 63 | 2015 |

Fitting coarse-grained distribution functions through an iterative force-matching method L Lu, JF Dama, GA Voth The Journal of chemical physics 139 (12), 09B606_1, 2013 | 63 | 2013 |

On the representability problem and the physical meaning of coarse-grained models JW Wagner, JF Dama, AEP Durumeric, GA Voth The Journal of chemical physics 145 (4), 044108, 2016 | 58 | 2016 |

Transition-tempered metadynamics: robust, convergent metadynamics via on-the-fly transition barrier estimation JF Dama, G Rotskoff, M Parrinello, GA Voth Journal of chemical theory and computation 10 (9), 3626-3633, 2014 | 48 | 2014 |

The theory of ultra-coarse-graining. 2. Numerical implementation A Davtyan, JF Dama, AV Sinitskiy, GA Voth Journal of chemical theory and computation 10 (12), 5265-5275, 2014 | 37 | 2014 |

Designing free energy surfaces that match experimental data with metadynamics AD White, JF Dama, GA Voth Journal of Chemical Theory and Computation 11 (6), 2451-2460, 2015 | 35 | 2015 |

The theory of ultra-coarse-graining. 3. Coarse-grained sites with rapid local equilibrium of internal states JF Dama, J Jin, GA Voth Journal of chemical theory and computation 13 (3), 1010-1022, 2017 | 32 | 2017 |

Exploring valleys without climbing every peak: more efficient and forgiving metabasin metadynamics via robust On-the-Fly Bias domain restriction JF Dama, GM Hocky, R Sun, GA Voth Journal of chemical theory and computation 11 (12), 5638-5650, 2015 | 31 | 2015 |

Transition-tempered metadynamics is a promising tool for studying the permeation of drug-like molecules through membranes R Sun, JF Dama, JS Tan, JP Rose, GA Voth Journal of chemical theory and computation 12 (10), 5157-5169, 2016 | 27 | 2016 |

Solvent free ionic solution models from multiscale coarse-graining Z Cao, JF Dama, L Lu, GA Voth Journal of chemical theory and computation 9 (1), 172-178, 2013 | 25 | 2013 |

Simulating protein mediated hydrolysis of ATP and other nucleoside triphosphates by combining QM/MM molecular dynamics with advances in metadynamics R Sun, O Sode, JF Dama, GA Voth Journal of chemical theory and computation 13 (5), 2332-2341, 2017 | 21 | 2017 |

Minimizing memory as an objective for coarse-graining N Guttenberg, JF Dama, MG Saunders, GA Voth, J Weare, AR Dinner The Journal of chemical physics 138 (9), 094111, 2013 | 15 | 2013 |

A perturbative solution to metadynamics ordinary differential equation P Tiwary, JF Dama, M Parrinello The Journal of chemical physics 143 (23), 234112, 2015 | 14 | 2015 |

An asymptotic analysis of differential electrical mobility classifiers AJ Downard, JF Dama, RC Flagan Aerosol Science and Technology 45 (6), 727-739, 2011 | 14 | 2011 |

Predicting the sensitivity of multiscale coarse-grained models to their underlying fine-grained model parameters JW Wagner, JF Dama, GA Voth Journal of chemical theory and computation 11 (8), 3547-3560, 2015 | 12 | 2015 |

Mesoscopic coarse-grained representations of fluids rigorously derived from atomistic models Y Han, JF Dama, GA Voth The Journal of Chemical Physics 149 (4), 044104, 2018 | 11 | 2018 |

Designing Alkaline Exchange Membranes from Scratch H Sarode, MA Vandiver, AM Maes, B Caire, JL Horan, Y Yan, Y Li, ... ECS Transactions 41 (1), 1761, 2011 | 4 | 2011 |