Pavel Tomancak

Cited by

	All	Since 2018
Citations	61688	45728
h-index	51	44
i10-index	89	77

11000

5500

2750

8250

20042005200620072008200920102011201220132014201520162017201820192020202120222023180 195 222 274 301 363 384 437 657 1109 1719 2155 3084 4304 5697 7460 8856 10521 10459 2715

Public access

View all

59 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Johannes SchindelinVerified email at wisc.edu
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Florian JugFondatione Human TechnopoleVerified email at fht.org
Gerald M. RubinJanelia Research Campus/HHMIVerified email at janelia.hhmi.org
Gene MyersMax-Planck Institute for Molecular Cell Biology & GeneticsVerified email at mpi-cbg.de
Jan HuiskenGeorg-August-University GöttingenVerified email at uni-goettingen.de
Anastasios PavlopoulosInstitute of Molecular Biology and Biotechnology (IMBB-FORTH)Verified email at imbb.forth.gr
Stephan W GrillMax Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Uwe OhlerProfessor, Max-Delbruck-Center & Humboldt University Berlin / Adjunct Professor, Duke UniversityVerified email at mdc-berlin.de
Benjamin P BermanAssociate Professor, The Hebrew University of Jerusalem School of MedicineVerified email at mail.huji.ac.il
Radoslaw Kamil EjsmontCRI, Paris, FranceVerified email at cri-paris.org
Helena JamborTU DresdenVerified email at tu-dresden.de
Caren NordenVerified email at igc.gulbenkian.pt
Mihail SarovHead of Genome Engineering, Max Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Iva KelavaSenior staff scientist at Welcome Sanger InstituteVerified email at sanger.ac.uk
Michael B. EisenInvestigator, HHMI and Associate Professor of Molecular and Cell Biology, UC BerkeleyVerified email at berkeley.edu
Simon AlbertiTechnische Universität DresdenVerified email at tu-dresden.de

Pavel Tomancak

Research Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden

Verified email at mpi-cbg.de - Homepage

evolutionary biology developmental biology imaging image analysis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012	43901	2012
Globally optimal stitching of tiled 3D microscopic image acquisitions S Preibisch, S Saalfeld, P Tomancak Bioinformatics 25 (11), 1463-1465, 2009	2074	2009
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function E Lécuyer, H Yoshida, N Parthasarathy, C Alm, T Babak, T Cerovina, ... Cell 131 (1), 174-187, 2007	1045	2007
Computational identification of DrosophilamicroRNA genes EC Lai, P Tomancak, RW Williams, GM Rubin Genome biology 4 (7), 1-20, 2003	980	2003
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	839	2012
Systematic determination of patterns of gene expression during Drosophila embryogenesis P Tomancak, A Beaton, R Weiszmann, E Kwan, SQ Shu, SE Lewis, ... Genome biology 3, 1-14, 2002	796	2002
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ... Proceedings of the National Academy of Sciences 99 (2), 757-762, 2002	739	2002
RNA buffers the phase separation behavior of prion-like RNA binding proteins S Maharana, J Wang, DK Papadopoulos, D Richter, A Pozniakovsky, ... Science 360 (6391), 918-921, 2018	731	2018
Content-aware image restoration: pushing the limits of fluorescence microscopy M Weigert, U Schmidt, T Boothe, A Müller, A Dibrov, A Jain, B Wilhelm, ... Nature methods 15 (12), 1090-1097, 2018	721	2018
Biological imaging software tools KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ... Nature methods 9 (7), 697-710, 2012	576	2012
Global analysis of patterns of gene expression during Drosophilaembryogenesis P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ... Genome biology 8 (7), 1-24, 2007	494	2007
An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017	453	2017
Gene expression divergence recapitulates the developmental hourglass model AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ... Nature 468 (7325), 811-814, 2010	439	2010
Software for bead-based registration of selective plane illumination microscopy data S Preibisch, S Saalfeld, J Schindelin, P Tomancak Nature methods 7 (6), 418-419, 2010	405	2010
An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ... PLoS biology 8 (10), e1000502, 2010	400	2010
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development AA Aboobaker, P Tomancak, N Patel, GM Rubin, EC Lai Proceedings of the National Academy of Sciences 102 (50), 18017-18022, 2005	323	2005
OpenSPIM: an open-access light-sheet microscopy platform PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ... nature methods 10 (7), 598-599, 2013	321	2013
Tissue clearing and its applications in neuroscience HR Ueda, A Ertürk, K Chung, V Gradinaru, A Chédotal, P Tomancak, ... Nature Reviews Neuroscience 21 (2), 61-79, 2020	317	2020
CATMAID: collaborative annotation toolkit for massive amounts of image data S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 25 (15), 1984-1986, 2009	315	2009
Visualization of image data from cells to organisms T Walter, DW Shattuck, R Baldock, ME Bastin, AE Carpenter, S Duce, ... Nature methods 7 (Suppl 3), S26-S41, 2010	308	2010

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors