Patrik D'haeseleer
Cited by
Cited by
Deep-sea oil plume enriches indigenous oil-degrading bacteria
TC Hazen, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, ...
Science 330 (6001), 204-208, 2010
Genetic network inference: from co-expression clustering to reverse engineering
P D’haeseleer, S Liang, R Somogyi
Bioinformatics 16 (8), 707-726, 2000
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
Linear modeling of mRNA expression levels during CNS development and injury
P D'haeseleer, X Wen, S Fuhrman, R Somogyi
Pacific Symposium on Biocomputing '99, 41-52, 1999
An immunological approach to change detection: Algorithms, analysis and implications
P D'haeseleer, S Forrest, P Helman
Proceedings 1996 IEEE Symposium on Security and Privacy, 110-119, 1996
How does gene expression clustering work?
P D'haeseleer
Nature biotechnology 23 (12), 1499-1501, 2005
What are DNA sequence motifs?
P D'haeseleer
Nature biotechnology 24 (4), 423-425, 2006
Automated modelling of signal transduction networks
M Steffen, A Petti, J Aach, P D'haeseleer, G Church
BMC bioinformatics 3 (1), 1-11, 2002
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
Z Lu, Y Deng, JD Van Nostrand, Z He, J Voordeckers, A Zhou, YJ Lee, ...
The ISME Journal 6 (2), 451-460, 2011
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
M Allgaier, A Reddy, JI Park, N Ivanova, P D'haeseleer, S Lowry, R Sapra, ...
Plos one 5 (1), e8812, 2010
How does DNA sequence motif discovery work?
P D'haeseleer
Nature biotechnology 24 (8), 959-961, 2006
Context preserving crossover in genetic programming
P D'haeseleer
Proceedings of the First IEEE Conference on Evolutionary Computation. IEEE …, 1994
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
Mining the gene expression matrix: Inferring gene relationships from large scale gene expression data
P D’haeseleer, X Wen, S Fuhrman, R Somogyi
Information processing in cells and tissues, 203-212, 1998
An Immunological Approach to Change Detection: Theoretical Results
P D'haeseleer
Proceedings 9th IEEE Computer Security Foundations Workshop, 18-26, 1996
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels
JI Park, EJ Steen, H Burd, SS Evans, AM Redding-Johnson, T Batth, ...
PloS one 7 (5), e37010, 2012
Complete genome sequence of Kytococcus sedentarius type strain (541T)
D Sims, T Brettin, JC Detter, C Han, A Lapidus, A Copeland, TG Del Rio, ...
Standards in Genomic Sciences 1 (1), 12-21, 2009
Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities
KM DeAngelis, JM Gladden, M Allgaier, P D’haeseleer, JL Fortney, ...
Bioenergy Research 3, 146-158, 2010
Reconstructing gene networks from large scale gene expression data.
P D'haeseleer
Gene expression data analysis and modeling
P D’haeseleer, S Liang, R Somogyi
Pacific symposium on biocomputing 99, 1999
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Articles 1–20