Joćo F. Matias Rodrigues
Joćo F. Matias Rodrigues
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Pathogens and host immunity in the ancient human oral cavity
C Warinner, JFM Rodrigues, R Vyas, C Trachsel, N Shved, J Grossmann, ...
Nature genetics 46 (4), 336-344, 2014
Graph topology plays a determinant role in the evolution of cooperation
FC Santos, JF Rodrigues, JM Pacheco
Proceedings of the Royal Society B: Biological Sciences 273 (1582), 51-55, 2006
Epidemic spreading and cooperation dynamics on homogeneous small-world networks
FC Santos, JF Rodrigues, JM Pacheco
Physical Review E 72 (5), 056128, 2005
Evolutionary plasticity and innovations in complex metabolic reaction networks
JF Matias Rodrigues, A Wagner
PLoS computational biology 5 (12), e1000613, 2009
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale
TSB Schmidt, JF Matias Rodrigues, C Von Mering
PLoS computational biology 10 (4), e1003594, 2014
Limits to robustness and reproducibility in the demarcation of operational taxonomic units
TSB Schmidt, JF Matias Rodrigues, C von Mering
Environmental microbiology 17 (5), 1689-1706, 2015
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis
JF Matias Rodrigues, TSB Schmidt, J Tackmann, C von Mering
Bioinformatics 33 (23), 3808-3810, 2017
Genotype networks in metabolic reaction spaces
A Samal, JF Matias Rodrigues, J Jost, OC Martin, A Wagner
BMC systems biology 4 (1), 1-21, 2010
The network of inter-regional direct investment stocks across Europe
S Battiston, JF Rodrigues, H Zeytinoglu
Advances in Complex Systems 10 (01), 29-51, 2007
Superessential reactions in metabolic networks
A Barve, JFM Rodrigues, A Wagner
Proceedings of the National Academy of Sciences 109 (18), E1121-E1130, 2012
Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing data
J Tackmann, JFM Rodrigues, C von Mering
Cell systems 9 (3), 286-296. e8, 2019
HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences
JF Matias Rodrigues, C von Mering
Bioinformatics 30 (2), 287-288, 2014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
OM Maistrenko, DR Mende, M Luetge, F Hildebrand, TSB Schmidt, SS Li, ...
The ISME journal 14 (5), 1247-1259, 2020
Genotype networks, innovation, and robustness in sulfur metabolism
JF Matias Rodrigues, A Wagner
BMC systems biology 5 (1), 1-13, 2011
A family of interaction-adjusted indices of community similarity
TSB Schmidt, JF Matias Rodrigues, C Von Mering
The ISME journal 11 (3), 791-807, 2017
Suppression of the Escherichia coli dnaA46 mutation by changes in the activities of the pyruvate-acetate node links DNA replication regulation to central carbon …
J Tymecka-Mulik, L Boss, M Maciąg-Dorszyńska, JF Matias Rodrigues, ...
PLoS One 12 (4), e0176050, 2017
Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites
J Tackmann, N Arora, TSB Schmidt, JFM Rodrigues, C von Mering
Microbiome 6 (1), 1-16, 2018
Green approaches for the synthesis of metal and metal oxide nanoparticles using microbial and plant extracts
J Jeevanandam, SF Kiew, S Boakye-Ansah, SY Lau, A Barhoum, ...
Nanoscale 14 (7), 2534-2571, 2022
Investments in random environments
JE Navarro-Barrientos, R Cantero-Alvarez, JFM Rodrigues, F Schweitzer
Physica A: Statistical Mechanics and its Applications 387 (8-9), 2035-2046, 2008
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