Mieczyslaw Torchala
Cited by
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Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
SwarmDock: a server for flexible protein–protein docking
M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates
Bioinformatics 29 (6), 807-809, 2013
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
The scoring of poses in protein-protein docking: current capabilities and future directions
IH Moal, M Torchala, PA Bates, J Fernández-Recio
BMC bioinformatics 14 (1), 286, 2013
A Markov‐chain model description of binding funnels to enhance the ranking of docked solutions
M Torchala, IH Moal, RAG Chaleil, R Agius, PA Bates
Proteins: Structure, Function, and Bioinformatics 81 (12), 2143-2149, 2013
Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization
R Agius, M Torchala, IH Moal, J Fernández-Recio, PA Bates
PLoS Comput Biol 9 (9), e1003216, 2013
Predicting the structure of protein–protein complexes using the SwarmDock web server
M Torchala, PA Bates
Protein structure prediction, 181-197, 2014
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection
IH Moal, D Barradas-Bautista, B Jiménez-García, M Torchala, ...
Bioinformatics 33 (12), 1806-1813, 2017
Search for inhibitors of aminoacyl-tRNA synthases by virtual click chemistry
M Hoffmann, M Torchala
Journal of molecular modeling 15 (6), 665-672, 2009
Output-input ratio in thermally fluctuating biomolecular machines
M Kurzynski, M Torchala, P Chelminiak
Physical Review E 89 (1), 012722, 2014
Underdamped vibrations control the primary electron transfer in photosynthesis at low temperatures
M Torchala, M Kurzynski
The Journal of Physical Chemistry B 112 (20), 6508-6512, 2008
IA, database of known ligands of aminoacyl-tRNA synthetases
M Torchala, M Hoffmann
Journal of computer-aided molecular design 21 (9), 523-525, 2007
Efficiency of matrix elements computations on parallel systems
M Torchała, J Komasa
Computational Methods in Science and Technology 9 (1-2), 137-145, 2003
RaTrav: a tool for calculating mean first-passage times on biochemical networks
M Torchala, P Chelminiak, M Kurzynski, PA Bates
BMC systems biology 7 (1), 130, 2013
Mean first-passage time calculations: comparison of the deterministic Hill’s algorithm with Monte Carlo simulations
M Torchala, P Chelminiak, PA Bates
The European Physical Journal B 85 (4), 116, 2012
Efficient parallel computations using MPI in chemistry and physics
M Torchala
Advances in Cheminformatics 1, 21-27, 2007
Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock
M Torchala, T Gerguri, RAG Chaleil, P Gordon, F Russell, M Keshani, ...
Proteins: Structure, Function, and Bioinformatics, 2019
Symulacje numeryczne wpływu dynamiki białka na pewne biomolekularne procesy przeniesienia elektronu
M Torchała
Adam Mickiewicz University, 2010
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