Alex Graudenzi

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Citations	1744	1050
h-index	22	18
i10-index	45	35

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Marco AntoniottiProfessor of Computer Science, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Chiara DamianiDepartment of Biotechnology and BiosciencesVerified email at unimib.it
Marco VILLANIUniversity of Modena and Reggio EmiliaVerified email at unimore.it
Roberto SERRAUniversità di Modena; European Centre for Living Technology, Venice; IAS, AmsterdamVerified email at unimore.it
Fabrizio AngaroniHuman TechnopoleVerified email at fht.org
Rocco PiazzaUniversity of Milano-BicoccaVerified email at unimib.it
Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Alessandro FilisettiCIO at Officinae Bio S.r.l.Verified email at officinae.bio
Annamaria ColacciUniversity of BolognaVerified email at unibo.it
Luca De SanoUniversità degli Studi di Milano BicoccaVerified email at campus.unimib.it
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
Marzia Di FilippoUniversity of Milano-BicoccaVerified email at unimib.it
Isabella CastiglioniResearcher, IBFM CNRVerified email at ibfm.cnr.it
Lucrezia PatrunoConputational Cancer Genomics research group, UCL Cancer InstituteVerified email at campus.unimib.it
De Matteis GiovanniDepartment of Mathematics and Information Sciences, Northumbria University, NewcastleVerified email at unipv.it
Claudia CavaIBFM-CNRVerified email at ibfm.cnr.it

Alex Graudenzi

Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca

Verified email at unimib.it - Homepage

Data Science AI Bioinformatics Cancer Evolution Complex Systems


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Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data R Serra, M Villani, A Graudenzi, SA Kauffman Journal of theoretical biology 246 (3), 449-460, 2007	162	2007
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	101	2015
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... Proceedings of the National Academy of Sciences 113 (28), E4025-E4034, 2016	93	2016
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019	89	2019
Inferring tree causal models of cancer progression with probability raising LO Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PloS one 9 (10), e108358, 2014	73	2014
Dynamical properties of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman Journal of Computational Biology 18 (10), 1291-1303, 2011	71	2011
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity A Graudenzi, D Maspero, F Angaroni, R Piazza, D Ramazzotti Iscience 24 (2), 2021	70	2021
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development G De Matteis, A Graudenzi, M Antoniotti Journal of mathematical biology 66 (7), 1409-1462, 2013	62	2013
SpidermiR: an R/bioconductor package for integrative analysis with miRNA data C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ... International journal of molecular sciences 18 (2), 274, 2017	51	2017
A review of computational strategies for denoising and imputation of single-cell transcriptomic data L Patruno, D Maspero, F Craighero, F Angaroni, M Antoniotti, A Graudenzi Briefings in bioinformatics 22 (4), bbaa222, 2021	50	2021
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... Bioinformatics 32 (12), 1911-1913, 2016	47	2016
A stochastic model of the emergence of autocatalytic cycles A Filisetti, A Graudenzi, R Serra, M Villani, D De Lucrezia, RM Füchslin, ... Journal of Systems Chemistry 2, 1-10, 2011	47	2011
Robustness analysis of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, A Colacci, SA Kauffman Journal of Computational Biology 18 (4), 559-577, 2011	42	2011
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data D Ramazzotti, A Graudenzi, L De Sano, M Antoniotti, G Caravagna BMC bioinformatics 20, 1-13, 2019	39	2019
Yellow nails, lymphedema and pleural effusion: treatment of chronic pleural effusion with pleuroperitoneal shunting JD Brofman, JB Hall, W Scott, AG Little Chest 97 (3), 743-745, 1990	38	1990
A stochastic model of autocatalytic reaction networks A Filisetti, A Graudenzi, R Serra, M Villani, RM Füchslin, N Packard, ... Theory in biosciences 131, 85-93, 2012	37	2012
The diffusion of perturbations in a model of coupled random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci Cellular Automata: 8th International Conference on Cellular Aotomata for …, 2008	30	2008
Growth and division in a dynamic protocell model M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra Life 4 (4), 837-864, 2014	29	2014
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics 87, 37-49, 2018	28	2018
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ... Patterns 2 (3), 2021	27	2021

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