Vladimir Espinosa Angarica
Vladimir Espinosa Angarica
Senior Research Fellow at DUKE-NUS Medical School, National University of Singapore
Verified email at - Homepage
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Cross-talk Between Iron and Nitrogen Regulatory Networks in Anabaena (Nostoc) sp. PCC 7120: Identification of Overlapping Genes in FurA and NtcA Regulons
S López-Gomollón, JA Hernández, S Pellicer, VE Angarica, ML Peleato, ...
Journal of Molecular Biology 374 (1), 267-281, 2007
Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains
VE Angarica, S Ventura, J Sancho
BMC Genomics 14 (1), 316, 2013
Prediction of disease–gene–drug relationships following a differential network analysis
S Zickenrott, VE Angarica, BB Upadhyaya, A Del Sol
Cell death & disease 7 (1), e2040-e2040, 2016
Prediction of TF target sites based on atomistic models of protein-DNA complexes
V Angarica, A Pérez, A Vasconcelos, J Collado-Vides, ...
BMC Bioinformatics 9 (1), 436, 2008
Structure of RdxA – an oxygen‐insensitive nitroreductase essential for metronidazole activation in Helicobacter pylori
M Martínez‐Júlvez, AL Rojas, I Olekhnovich, VE Angarica, PS Hoffman, ...
The FEBS journal 279 (23), 4306-4317, 2012
The role of DNA-binding specificity in the evolution of bacterial regulatory networks
I Lozada-Chávez, VE Angarica, J Collado-Vides, B Contreras-Moreira
Journal of Molecular Biology 379 (3), 627-643, 2008
The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes
A González, VE Angarica, J Sancho, MF Fillat
Nucleic Acids Research 42 (8), 4833-46, 2014
Bioinformatics tools for genome-wide epigenetic research
VE Angarica, A Sol
Neuroepigenomics in Aging and Disease, 489-512, 2017
Identifying potential novel drugs against Helicobacter pylori by targeting the essential response regulator HsrA
A González, S Salillas, A Velázquez-Campoy, V Espinosa Angarica, ...
Scientific reports 9 (1), 1-13, 2019
Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes
AG Perez, VE Angarica, ATR Vasconcelos, J Collado-Vides
Nucleic Acids Research 35 (suppl 1), D132-D136, 2007
Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons
J Wang, P Jenjaroenpun, A Bhinge, VE Angarica, A Del Sol, I Nookaew, ...
Genome research 27 (11), 1783-1794, 2017
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes
AD Gonzalez, V Espinosa, AT Vasconcelos, E Perez-Rueda, ...
Nucleic Acids Research 33 (suppl 1), D98-D102, 2005
PrionScan: an online database of predicted prion domains in complete proteomes
VE Angarica, A Angulo, A Giner, G Losilla, S Ventura, J Sancho
BMC Genomics 15 (1), 102, 2014
The RNA polymerase II factor RPAP1 is critical for mediator-driven transcription and cell identity
CJ Lynch, R Bernad, I Calvo, S Nóbrega-Pereira, S Ruiz, N Ibarz, ...
Cell reports 22 (2), 396-410, 2018
A differential network analysis approach for lineage specifier prediction in stem cell subpopulations
S Okawa, VE Angarica, I Lemischka, K Moore, A Del Sol
NPJ systems biology and applications 1 (1), 1-8, 2015
Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes
V Espinosa, AD Gonzalez, AT Vasconcelos, AM Huerta, J Collado-Vides
Journal of Molecular Biology 354 (1), 184-199, 2005
Design and Structure of an Equilibrium Protein Folding Intermediate: A Hint into Dynamical Regions of Proteins
S Ayuso-Tejedor, VE Angarica, M Bueno, LA Campos, O Abián, ...
Journal of Molecular Biology 400 (4), 922-934, 2010
Lysine acetyltransferase Tip60 is required for hematopoietic stem cell maintenance
A Numata, HS Kwok, QL Zhou, J Li, R Tirado-Magallanes, VE Angarica, ...
Blood 136 (15), 1735-1747, 2020
Repurposing Dihydropyridines for Treatment of Helicobacter pylori Infection
A González, J Casado, E Chueca, S Salillas, A Velázquez-Campoy, ...
Pharmaceutics 11 (12), 681, 2019
Protein dynamics governed by interfaces of high polarity and low packing density
VE Angarica, J Sancho
PLoS ONE 7 (10), e48212, 2012
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