Md Abul Hassan Samee
Md Abul Hassan Samee
Assistant Professor, Baylor College of Medicine
Email confirmado em - Página inicial
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Citado por
Complex interdependence regulates heterotypic transcription factor distribution and coordinates cardiogenesis
L Luna-Zurita, CU Stirnimann, S Glatt, BL Kaynak, S Thomas, F Baudin, ...
Cell 164 (5), 999-1014, 2016
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
X He, MAH Samee, C Blatti, S Sinha
PLoS computational biology 6 (9), e1000935, 2010
A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs
MAH Samee, BG Bruneau, KS Pollard
Cell systems 8 (1), 27-42. e6, 2019
A systematic ensemble approach to thermodynamic modeling of gene expression from sequence data
MAH Samee, B Lim, N Samper, H Lu, CA Rushlow, G Jiménez, ...
Cell systems 1 (6), 396-407, 2015
Evidence for deep regulatory similarities in early developmental programs across highly diverged insects
M Kazemian, K Suryamohan, JY Chen, Y Zhang, MAH Samee, MS Halfon, ...
Genome biology and evolution 6 (9), 2301-2320, 2014
Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors
H Ryu, F Inoue, S Whalen, A Williams, M Kircher, B Martin, B Alvarado, ...
BioRxiv 256313, 2018
Quantitative modeling of a gene's expression from its intergenic sequence
MAH Samee, S Sinha
PLoS computational biology 10 (3), e1003467, 2014
Simulations of enhancer evolution provide mechanistic insights into gene regulation
T Duque, MAH Samee, M Kazemian, HN Pham, MH Brodsky, S Sinha
Molecular biology and evolution 31 (1), 184-200, 2014
Machine learning dissection of human accelerated regions in primate neurodevelopment
S Whalen, F Inoue, H Ryu, T Fair, E Markenscoff-Papadimitriou, K Keough, ...
Neuron 111 (6), 857-873. e8, 2023
Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data
MAH Samee, S Sinha
Methods 62 (1), 79-90, 2013
Cell-type modeling in spatial transcriptomics data elucidates spatially variable colocalization and communication between cell-types in mouse brain
FJG Canozo, Z Zuo, JF Martin, MAH Samee
Cell Systems 13 (1), 58-70. e5, 2022
Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA
MAH Samee, T Lydiard-Martin, KM Biette, BJ Vincent, MD Bragdon, ...
Cell reports 21 (1), 236-245, 2017
Incorporating chromatin accessibility data into sequence-to-expression modeling
PC Peng, MAH Samee, S Sinha
Biophysical journal 108 (5), 1257-1267, 2015
Global parameter estimation for thermodynamic models of transcriptional regulation
Y Suleimenov, A Ay, MAH Samee, JM Dresch, S Sinha, DN Arnosti
Methods 62 (1), 99-108, 2013
Minimum segment drawings of series-parallel graphs with the maximum degree three
MAH Samee, MJ Alam, MA Adnan, MS Rahman
International Symposium on Graph Drawing, 408-419, 2008
Minimum-Layer Upward Drawings of Trees.
MJ Alam, MAH Samee, M Rabbi, MS Rahman
J. Graph Algorithms Appl. 14 (2), 245-267, 2010
Dual-Mode Tumor Imaging Using Probes That Are Responsive to Hypoxia-Induced Pathological Conditions
SAAS Subasinghe, R Pautler, MAH Samee, JT Yustein, MJ Allen
Biosensors 12 (7), 478, 2022
Upward Planar Drawings of Series-Parallel Digraphs with Maximum Degree Three.
MAH Samee, MS Rahman
WALCOM 7, 28-45, 2007
Decoding the PITX2 controlled genetic network in atrial fibrillation
JD Steimle, FJG Canozo, M Park, ZA Kadow, MAH Samee, JF Martin
JCI Insight, 2022
Upward drawings of trees on the minimum number of layers
MJ Alam, MAH Samee, MM Rabbi, MS Rahman
International Workshop on Algorithms and Computation, 88-99, 2008
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