| OrthoFinder: phylogenetic orthology inference for comparative genomics DM Emms, S Kelly Genome biology 20, 1-14, 2019 | 3056 | 2019 |
| OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy DM Emms, S Kelly Genome biology 16 (1), 1-14, 2015 | 2685 | 2015 |
| STAG: species tree inference from all genes DM Emms, S Kelly BioRxiv, 267914, 2018 | 188 | 2018 |
| STRIDE: species tree root inference from gene duplication events DM Emms, S Kelly Molecular biology and evolution 34 (12), 3267-3278, 2017 | 176 | 2017 |
| A matrix representation of graphs and its spectrum as a graph invariant D Emms, ER Hancock, S Severini, RC Wilson arXiv preprint quant-ph/0505026, 2005 | 94 | 2005 |
| OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences DM Emms, S Kelly BioRxiv 466201, 2018 | 90 | 2018 |
| The stepwise increase in the number of transcription factor families in the Precambrian predated the diversification of plants on land B Catarino, AJ Hetherington, DM Emms, S Kelly, L Dolan Molecular biology and evolution 33 (11), 2815-2819, 2016 | 80 | 2016 |
| Coined quantum walks lift the cospectrality of graphs and trees D Emms, S Severini, RC Wilson, ER Hancock Pattern Recognition 42 (9), 1988-2002, 2009 | 69 | 2009 |
| Independent and parallel evolution of new genes by gene duplication in two origins of C4 photosynthesis provides new insight into the mechanism of phloem loading in C4 species DM Emms, S Covshoff, JM Hibberd, S Kelly Molecular Biology and Evolution 33 (7), 1796-1806, 2016 | 63 | 2016 |
| Quantum walks, Ihara zeta functions and cospectrality in regular graphs P Ren, T Aleksić, D Emms, RC Wilson, ER Hancock Quantum Information Processing 10, 405-417, 2011 | 62 | 2011 |
| Graph matching using the interference of continuous-time quantum walks D Emms, RC Wilson, ER Hancock Pattern Recognition 42 (5), 985-1002, 2009 | 62 | 2009 |
| Agricultural selection of wheat has been shaped by plant-microbe interactions A Tkacz, F Pini, TR Turner, E Bestion, J Simmonds, P Howell, ... Frontiers in Microbiology 11, 132, 2020 | 56 | 2020 |
| Multiple metabolic innovations and losses are associated with major transitions in land plant evolution N Cannell, DM Emms, AJ Hetherington, J MacKay, S Kelly, L Dolan, ... Current Biology 30 (10), 1783-1800. e11, 2020 | 42 | 2020 |
| The Quest for Orthologs benchmark service and consensus calls in 2020 AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ... Nucleic acids research 48 (W1), W538-W545, 2020 | 36 | 2020 |
| An alternative strategy for trypanosome survival in the mammalian bloodstream revealed through genome and transcriptome analysis of the ubiquitous bovine parasite Trypanosoma … S Kelly, A Ivens, GA Mott, E O’Neill, D Emms, O Macleod, P Voorheis, ... Genome Biology and Evolution 9 (8), 2093-2109, 2017 | 34 | 2017 |
| GENESPACE tracks regions of interest and gene copy number variation across multiple genomes JT Lovell, A Sreedasyam, ME Schranz, M Wilson, JW Carlson, A Harkess, ... Elife 11, e78526, 2022 | 33 | 2022 |
| Graph matching using the interference of discrete-time quantum walks D Emms, RC Wilson, ER Hancock Image and Vision Computing 27 (7), 934-949, 2009 | 33 | 2009 |
| Graph embedding using quantum commute times D Emms, RC Wilson, E Hancock Graph-Based Representations in Pattern Recognition: 6th IAPR-TC-15 …, 2007 | 33 | 2007 |
| Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-off JW Bouvier, DM Emms, T Rhodes, JS Bolton, A Brasnett, A Eddershaw, ... Molecular Biology and Evolution 38 (7), 2880-2896, 2021 | 31 | 2021 |
| SHOOT: phylogenetic gene search and ortholog inference DM Emms, S Kelly Genome Biology 23 (1), 1-13, 2022 | 27 | 2022 |
Steve KellyUniversity of OxfordVerified email at plants.ox.ac.uk
