David Emms
David Emms
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Cited by
Cited by
OrthoFinder: phylogenetic orthology inference for comparative genomics
DM Emms, S Kelly
Genome biology 20, 1-14, 2019
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
DM Emms, S Kelly
Genome biology 16 (1), 1-14, 2015
STAG: species tree inference from all genes
DM Emms, S Kelly
BioRxiv, 267914, 2018
STRIDE: species tree root inference from gene duplication events
DM Emms, S Kelly
Molecular biology and evolution 34 (12), 3267-3278, 2017
A matrix representation of graphs and its spectrum as a graph invariant
D Emms, ER Hancock, S Severini, RC Wilson
arXiv preprint quant-ph/0505026, 2005
OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences
DM Emms, S Kelly
BioRxiv 466201, 2018
The stepwise increase in the number of transcription factor families in the Precambrian predated the diversification of plants on land
B Catarino, AJ Hetherington, DM Emms, S Kelly, L Dolan
Molecular biology and evolution 33 (11), 2815-2819, 2016
Coined quantum walks lift the cospectrality of graphs and trees
D Emms, S Severini, RC Wilson, ER Hancock
Pattern Recognition 42 (9), 1988-2002, 2009
Independent and parallel evolution of new genes by gene duplication in two origins of C4 photosynthesis provides new insight into the mechanism of phloem loading in C4 species
DM Emms, S Covshoff, JM Hibberd, S Kelly
Molecular Biology and Evolution 33 (7), 1796-1806, 2016
Quantum walks, Ihara zeta functions and cospectrality in regular graphs
P Ren, T Aleksić, D Emms, RC Wilson, ER Hancock
Quantum Information Processing 10, 405-417, 2011
Graph matching using the interference of continuous-time quantum walks
D Emms, RC Wilson, ER Hancock
Pattern Recognition 42 (5), 985-1002, 2009
Agricultural selection of wheat has been shaped by plant-microbe interactions
A Tkacz, F Pini, TR Turner, E Bestion, J Simmonds, P Howell, ...
Frontiers in Microbiology 11, 132, 2020
Multiple metabolic innovations and losses are associated with major transitions in land plant evolution
N Cannell, DM Emms, AJ Hetherington, J MacKay, S Kelly, L Dolan, ...
Current Biology 30 (10), 1783-1800. e11, 2020
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ...
Nucleic acids research 48 (W1), W538-W545, 2020
An alternative strategy for trypanosome survival in the mammalian bloodstream revealed through genome and transcriptome analysis of the ubiquitous bovine parasite Trypanosoma …
S Kelly, A Ivens, GA Mott, E O’Neill, D Emms, O Macleod, P Voorheis, ...
Genome Biology and Evolution 9 (8), 2093-2109, 2017
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
JT Lovell, A Sreedasyam, ME Schranz, M Wilson, JW Carlson, A Harkess, ...
Elife 11, e78526, 2022
Graph matching using the interference of discrete-time quantum walks
D Emms, RC Wilson, ER Hancock
Image and Vision Computing 27 (7), 934-949, 2009
Graph embedding using quantum commute times
D Emms, RC Wilson, E Hancock
Graph-Based Representations in Pattern Recognition: 6th IAPR-TC-15 …, 2007
Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-off
JW Bouvier, DM Emms, T Rhodes, JS Bolton, A Brasnett, A Eddershaw, ...
Molecular Biology and Evolution 38 (7), 2880-2896, 2021
SHOOT: phylogenetic gene search and ortholog inference
DM Emms, S Kelly
Genome Biology 23 (1), 1-13, 2022
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