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Feichen Shen, PhD, Fellow of AMIA
Feichen Shen, PhD, Fellow of AMIA
Associate Director of NLP at Bristol Myers Squibb, Adjunct Associate Professor at Mayo Clinic
Verified email at bms.com - Homepage
Title
Cited by
Cited by
Year
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
7842018
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
4202018
A clinical text classification paradigm using weak supervision and deep representation
Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu
BMC medical informatics and decision making 19, 1-13, 2019
2112019
Clinical concept extraction: a methodology review
S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ...
Journal of biomedical informatics 109, 103526, 2020
1472020
MedSTS: a resource for clinical semantic textual similarity
Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu
Language Resources and Evaluation 54, 57-72, 2020
1362020
Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes
JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ...
The American Journal of Human Genetics 103 (1), 58-73, 2018
1092018
The 2019 n2c2/ohnlp track on clinical semantic textual similarity: overview
Y Wang, S Fu, F Shen, S Henry, O Uzuner, H Liu
JMIR medical informatics 8 (11), e23375, 2020
672020
Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches
Q Zhu, CUI Tao, F Shen, CG Chute
Biocomputing 2014, 172-182, 2014
612014
The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.
S Henry, Y Wang, F Shen, O Uzuner
Journal of the American Medical Informatics Association: JAMIA 27 (10), 1529 …, 2020
57*2020
Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data
N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang
AMIA Summits on Translational Science Proceedings 2018, 74, 2018
532018
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data
N Hong, A Wen, F Shen, S Sohn, C Wang, H Liu, G Jiang
JAMIA open 2 (4), 570-579, 2019
482019
Overview of the BioCreative/OHNLP challenge 2018 task 2: clinical semantic textual similarity
Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu
Proceedings of the BioCreative/OHNLP Challenge 2018, 2018
442018
Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature
Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu
Proceedings of the 8th acm international conference on bioinformatics …, 2017
432017
Knowledge discovery from biomedical ontologies in cross domains
F Shen, Y Lee
PloS one 11 (8), e0160005, 2016
402016
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology
F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu
Journal of biomedical informatics 96, 103246, 2019
382019
Leveraging collaborative filtering to accelerate rare disease diagnosis
F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu
AMIA Annual Symposium Proceedings 2017, 1554, 2017
382017
Collaborative mobile-cloud computing for civil infrastructure condition inspection
ZQ Chen, J Chen, F Shen, Y Lee
Journal of Computing in Civil Engineering 29 (5), 04014066, 2015
372015
Extracting chemical–protein relations using attention-based neural networks
S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ...
Database 2018, bay102, 2018
362018
Rare disease knowledge enrichment through a data-driven approach
F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu
BMC medical informatics and decision making 19, 1-11, 2019
332019
Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches
F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu
JMIR medical informatics 6 (4), e11301, 2018
332018
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Articles 1–20