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Paola Bonizzoni
Paola Bonizzoni
Verified email at unimib.it
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Cited by
Cited by
Year
The complexity of multiple sequence alignment with SP-score that is a metric
P Bonizzoni, G Della Vedova
Theoretical Computer Science 259 (1-2), 63-79, 2001
1832001
The haplotyping problem: an overview of computational models and solutions
P Bonizzoni, G Della Vedova, R Dondi, J Li
Journal of Computer Science and Technology 18, 675-688, 2003
1572003
Reconciling a gene tree to a species tree under the duplication cost model
P Bonizzoni, G Della Vedova, R Dondi
Theoretical computer science 347 (1-2), 36-53, 2005
972005
ASPicDB: a database resource for alternative splicing analysis
T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ...
Bioinformatics 24 (10), 1300-1304, 2008
592008
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
562016
Experimenting an approximation algorithm for the LCS
P Bonizzoni, G Della Vedova, G Mauri
Discrete Applied Mathematics 110 (1), 13-24, 2001
522001
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences
P Bonizzoni, R Rizzi, G Pesole
BMC bioinformatics 6, 1-16, 2005
512005
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ...
Nucleic acids research 39 (suppl_1), D80-D85, 2010
482010
Inferring cancer progression from single-cell sequencing while allowing mutation losses
S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ...
Bioinformatics 37 (3), 326-333, 2021
452021
Exemplar longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007
442007
On the approximation of correlation clustering and consensus clustering
P Bonizzoni, G Della Vedova, R Dondi, T Jiang
Journal of Computer and System Sciences 74 (5), 671-696, 2008
432008
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19, 1-21, 2018
422018
Separating some splicing models
P Bonizzoni, C Ferretti, G Mauri, R Zizza
Information Processing Letters 79 (6), 255-259, 2001
412001
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology 7, 278-292, 2019
402019
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ...
Nucleic Acids Research 34 (suppl_2), W440-W443, 2006
392006
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology 23 (9), 718-736, 2016
382016
Variants of constrained longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Information Processing Letters 110 (20), 877-881, 2010
382010
An approximation algorithm for the shortest common supersequence problem: an experimental analysis
P Barone, P Bonizzoni, GD Vedova, G Mauri
Proceedings of the 2001 ACM symposium on applied computing, 56-60, 2001
382001
Further steps in TANGO: improved taxonomic assignment in metagenomics
D Alonso-Alemany, A Barré, S Beretta, P Bonizzoni, M Nikolski, ...
Bioinformatics 30 (1), 17-23, 2014
352014
The binary perfect phylogeny with persistent characters
P Bonizzoni, C Braghin, R Dondi, G Trucco
Theoretical computer science 454, 51-63, 2012
342012
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Articles 1–20