Viktoria Dorfer
Viktoria Dorfer
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MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra
V Dorfer, P Pichler, T Stranzl, J Stadlmann, T Taus, S Winkler, K Mechtler
Journal of proteome research 13 (8), 3679-3684, 2014
Architecture and design of the heuristiclab optimization environment
S Wagner, G Kronberger, A Beham, M Kommenda, A Scheibenpflug, ...
Advanced methods and applications in computational intelligence, 197-261, 2014
CharmeRT: Boosting peptide identifications by chimeric spectra identification and retention time prediction
V Dorfer, S Maltsev, S Winkler, K Mechtler
Journal of proteome research 17 (8), 2581-2589, 2018
Expanding the use of spectral libraries in proteomics
EW Deutsch, Y Perez-Riverol, RJ Chalkley, M Wilhelm, S Tate, ...
Journal of proteome research 17 (12), 4051-4060, 2018
Advanced Methods and Applications in Computational Intelligence, volume 6 of Topics in Intelligent Engineering and Informatics, chapter Architecture and Design of the …
S Wagner, G Kronberger, A Beham, M Kommenda, A Scheibenpflug, ...
Springer 53 (55), 197-261, 2014
Data-based prediction of sentiments using heterogeneous model ensembles
S Winkler, S Schaller, V Dorfer, M Affenzeller, G Petz, M Karpowicz
Soft Computing 19 (12), 3401-3412, 2015
HeuristicLab 3.3: A unified approach to metaheuristic optimization
S Wagner, A Beham, G Kronberger, M Kommenda, E Pitzer, M Kofler, ...
Actas del séptimo congreso español sobre Metaheurísticas, Algoritmos …, 2010
Universal Spectrum Explorer: A standalone (web-) application for cross-resource spectrum comparison
T Schmidt, P Samaras, V Dorfer, C Panse, T Kockmann, L Bichmann, ...
Journal of Proteome Research, 2021
MS Annika: A New Cross-Linking Search Engine
GJ Pirklbauer, CE Stieger, M Matzinger, S Winkler, K Mechtler, V Dorfer
Journal of proteome research 20 (5), 2560-2569, 2021
MS Amanda 2.0: Advancements in the standalone implementation
V Dorfer, M Strobl, S Winkler, K Mechtler
Rapid Communications in Mass Spectrometry 35 (11), e9088, 2021
PhoStar: Identifying Tandem Mass Spectra of Phosphorylated Peptides before Database Search
S Dorl, S Winkler, K Mechtler, V Dorfer
Journal of proteome research 17 (1), 290-295, 2017
White Box vs. Black Box Modeling: On the Performance of Deep Learning, Random Forests, and Symbolic Regression in Solving Regression Problems
M Affenzeller, B Burlacu, V Dorfer, S Dorl, G Halmerbauer, ...
International Conference on Computer Aided Systems Theory, 288-295, 2019
Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification
DM Borgmann, S Mayr, H Polin, S Schaller, V Dorfer, L Obritzberger, ...
Scientific reports 6 (1), 1-12, 2016
On the use of estimated tumour marker classifications in tumour diagnosis prediction–a case study for breast cancer
SM Winkler*, M Affenzeller, G Kronberger, M Kommenda, S Wagner, ...
International Journal of Simulation and Process Modelling 8 (1), 29-41, 2013
Proceedings of the EuBIC Winter School 2017
S Willems, D Bouyssié, M David, M Locard-Paulet, K Mechtler, ...
Journal of proteomics 161, 78-80, 2017
Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis
C Frech, M Kommenda, V Dorfer, T Kern, H Hintner, JW Bauer, K Önder
BMC bioinformatics 10 (1), 1-13, 2009
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ...
EuPA Open Proteomics 24, 1-6, 2020
Proceedings of the EuBIC developer's meeting 2018
S Willems, D Bouyssié, D Deforce, V Dorfer, V Gorshkov, D Kopczynski, ...
Journal of proteomics 187, 25-27, 2018
The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS): an open community for bioinformatics training and research
W Bittremieux, D Bouyssié, V Dorfer, M Locard‐Paulet, Y Perez‐Riverol, ...
Rapid Communications in Mass Spectrometry, e9087, 2021
A symbolic regression based scoring system improving peptide identifications for MS Amanda
V Dorfer, S Maltsev, S Dreiseitl, K Mechtler, SM Winkler
Proceedings of the Companion Publication of the 2015 Annual Conference on …, 2015
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