| BIPES, a cost-effective high-throughput method for assessing microbial diversity HW Zhou, DF Li, NFY Tam, XT Jiang, H Zhang, HF Sheng, J Qin, X Liu, ... The ISME journal 5 (4), 741-749, 2011 | 205 | 2011 |
| Vitamin D inhibits COX-2 expression and inflammatory response by targeting thioesterase superfamily member 4 Q Wang, Y He, Y Shen, Q Zhang, D Chen, C Zuo, J Qin, H Wang, J Wang, ... Journal of Biological Chemistry 289 (17), 11681-11694, 2014 | 166 | 2014 |
| Group sparse optimization via lp, q regularization Y Hu, C Li, K Meng, J Qin, X Yang Journal of Machine Learning Research 18 (30), 1-52, 2017 | 135 | 2017 |
| ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor J Qin, MJ Li, P Wang, MQ Zhang, J Wang Nucleic acids research 39 (suppl_2), W430-W436, 2011 | 73 | 2011 |
| Inferring gene regulatory networks by integrating ChIP-seq/chip and transcriptome data via LASSO-type regularization methods J Qin, Y Hu, F Xu, HK Yalamanchili, J Wang Methods 67 (3), 294-303, 2014 | 62 | 2014 |
| NFATc2 enhances tumor-initiating phenotypes through the NFATc2/SOX2/ALDH axis in lung adenocarcinoma ZJ Xiao, J Liu, SQ Wang, Y Zhu, XY Gao, VPC Tin, J Qin, JW Wang, ... Elife 6, e26733, 2017 | 53 | 2017 |
| Inhibition of KAP1 enhances hypoxia-induced Kaposi's sarcoma-associated herpesvirus reactivation through RBP-Jκ L Zhang, C Zhu, Y Guo, F Wei, J Lu, J Qin, S Banerjee, J Wang, H Shang, ... Journal of virology 88 (12), 6873-6884, 2014 | 53 | 2014 |
| Integration of single-cell multi-omics for gene regulatory network inference X Hu, Y Hu, F Wu, RWT Leung, J Qin Computational and Structural Biotechnology Journal 18, 1925-1938, 2020 | 46 | 2020 |
| Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules JT Zhang, H Qin, FK Man Cheung, J Su, DD Zhang, SY Liu, XF Li, J Qin, ... Journal of extracellular vesicles 8 (1), 1663666, 2019 | 45 | 2019 |
| The current status and challenges in computational analysis of genomic big data Y Qin, HK Yalamanchili, J Qin, B Yan, J Wang Big data research 2 (1), 12-18, 2015 | 45 | 2015 |
| Activation of E-prostanoid 3 receptor in macrophages facilitates cardiac healing after myocardial infarction J Tang, Y Shen, G Chen, Q Wan, K Wang, J Zhang, J Qin, G Liu, S Zuo, ... Nature communications 8 (1), 14656, 2017 | 42 | 2017 |
| The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation Z Cui, Y Liu, J Yuan, X Zhang, T Ventura, KY Ma, S Sun, C Song, D Zhan, ... Nature Communications 12 (1), 2395, 2021 | 41 | 2021 |
| Phylogenomic analyses of brachyuran crabs support early divergence of primary freshwater crabs KY Ma, J Qin, CW Lin, TY Chan, PKL Ng, KH Chu, LM Tsang Molecular Phylogenetics and Evolution 135, 62-66, 2019 | 41 | 2019 |
| Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance H Bildsoe, X Fan, EE Wilkie, A Ashoti, VJ Jones, M Power, J Qin, J Wang, ... Developmental biology 418 (1), 189-203, 2016 | 41 | 2016 |
| PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data D Guan, J Shao, Z Zhao, P Wang, J Qin, Y Deng, KR Boheler, J Wang, ... Nucleic acids research 42 (W1), W130-W136, 2014 | 33 | 2014 |
| DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment HK Yalamanchili, B Yan, MJ Li, J Qin, Z Zhao, FYL Chin, J Wang Bioinformatics 30 (3), 377-383, 2014 | 30 | 2014 |
| An integrative method to decode regulatory logics in gene transcription B Yan, D Guan, C Wang, J Wang, B He, J Qin, KR Boheler, A Lu, G Zhang, ... Nature communications 8 (1), 1044, 2017 | 26 | 2017 |
| ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks P Wang, J Qin, Y Qin, Y Zhu, LY Wang, MJ Li, MQ Zhang, J Wang Nucleic acids research 43 (W1), W264-W269, 2015 | 26 | 2015 |
| EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans LY Wang, P Wang, MJ Li, J Qin, X Wang, MQ Zhang, J Wang Epigenetics 6 (12), 1505-1512, 2011 | 26 | 2011 |
| Tissue interactions, cell signaling and transcriptional control in the cranial mesoderm during craniofacial development X Fan, DAF Loebel, H Bildsoe, EE Wilkie, J Qin, J Wang, PPL Tam Aims Genetics 3 (01), 074-098, 2016 | 25 | 2016 |
