Matthew Olm
Matthew Olm
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
Measurement of bacterial replication rates in microbial communities
CT Brown, MR Olm, BC Thomas, JF Banfield
Nature biotechnology 34 (12), 1256-1263, 2016
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1-7, 2017
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles
CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ...
mBio 9 (2), e00441-18, 2018
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes
WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ...
Journal of virology 88 (5), 2461-2480, 2014
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6 (1), 1-12, 2018
Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome
SF Rahman, MR Olm, MJ Morowitz, JF Banfield
MSystems 3 (1), 2018
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ...
Science advances 5 (12), eaax5727, 2019
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7 (1), 1-16, 2019
Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ...
The ISME journal 13 (6), 1618-1634, 2019
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PBM Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, I Sharon, ...
Nature communications 10 (1), 1-15, 2019
Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems
RM Dedrick, TN Mavrich, WL Ng, JC Cervantes Reyes, MR Olm, RE Rush, ...
Molecular microbiology 101 (4), 625-644, 2016
The source and evolutionary history of a microbial contaminant identified through soil metagenomic analysis
MR Olm, CN Butterfield, A Copeland, TC Boles, BC Thomas, JF Banfield
MBio 8 (1), 2017
Consistent metagenome-derived metrics verify and delineate bacterial species boundaries
MR Olm, A Crits-Christoph, S Diamond, A Lavy, PBM Carnevali, ...
Msystems 5 (1), 2020
InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains
MR Olm, A Crits-Christoph, K Bouma-Gregson, B Firek, M Morowitz, ...
BioRxiv, 2020
Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield
The ISME Journal, 1-13, 2020
Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
Y Sher, MR Olm, T Raveh-Sadka, CT Brown, R Sher, B Firek, R Baker, ...
Plos one 15 (3), e0229537, 2020
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