Matthew Olm
Matthew Olm
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
2432017
Measurement of bacterial replication rates in microbial communities
CT Brown, MR Olm, BC Thomas, JF Banfield
Nature biotechnology 34 (12), 1256-1263, 2016
1842016
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1-7, 2017
732017
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
712020
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
542017
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
462019
Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles
CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ...
mBio 9 (2), e00441-18, 2018
37*2018
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes
WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ...
Journal of virology 88 (5), 2461-2480, 2014
362014
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6 (1), 1-12, 2018
292018
Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome
SF Rahman, MR Olm, MJ Morowitz, JF Banfield
MSystems 3 (1), 2018
232018
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ...
Science advances 5 (12), eaax5727, 2019
222019
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7 (1), 1-16, 2019
212019
Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ...
The ISME journal 13 (6), 1618-1634, 2019
202019
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PBM Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, I Sharon, ...
Nature communications 10 (1), 1-15, 2019
202019
Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems
RM Dedrick, TN Mavrich, WL Ng, JC Cervantes Reyes, MR Olm, RE Rush, ...
Molecular microbiology 101 (4), 625-644, 2016
182016
The source and evolutionary history of a microbial contaminant identified through soil metagenomic analysis
MR Olm, CN Butterfield, A Copeland, TC Boles, BC Thomas, JF Banfield
MBio 8 (1), 2017
122017
Consistent metagenome-derived metrics verify and delineate bacterial species boundaries
MR Olm, A Crits-Christoph, S Diamond, A Lavy, PBM Carnevali, ...
Msystems 5 (1), 2020
8*2020
InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains
MR Olm, A Crits-Christoph, K Bouma-Gregson, B Firek, M Morowitz, ...
BioRxiv, 2020
42020
Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield
The ISME Journal, 1-13, 2020
3*2020
Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
Y Sher, MR Olm, T Raveh-Sadka, CT Brown, R Sher, B Firek, R Baker, ...
Plos one 15 (3), e0229537, 2020
22020
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Articles 1–20