| dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication MR Olm, CT Brown, B Brooks, JF Banfield The ISME journal 11 (12), 2864-2868, 2017 | 243 | 2017 |
| Measurement of bacterial replication rates in microbial communities CT Brown, MR Olm, BC Thomas, JF Banfield Nature biotechnology 34 (12), 1256-1263, 2016 | 184 | 2016 |
| Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ... Nature communications 8 (1), 1-7, 2017 | 73 | 2017 |
| Clades of huge phages from across Earth’s ecosystems B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ... Nature 578 (7795), 425-431, 2020 | 71 | 2020 |
| Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ... Genome research 27 (4), 601-612, 2017 | 54 | 2017 |
| Megaphages infect Prevotella and variants are widespread in gut microbiomes AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ... Nature microbiology 4 (4), 693-700, 2019 | 46 | 2019 |
| Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ... mBio 9 (2), e00441-18, 2018 | 37* | 2018 |
| Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ... Journal of virology 88 (5), 2461-2480, 2014 | 36 | 2014 |
| The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ... Microbiome 6 (1), 1-12, 2018 | 29 | 2018 |
| Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome SF Rahman, MR Olm, MJ Morowitz, JF Banfield MSystems 3 (1), 2018 | 23 | 2018 |
| Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ... Science advances 5 (12), eaax5727, 2019 | 22 | 2019 |
| Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield Microbiome 7 (1), 1-16, 2019 | 21 | 2019 |
| Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ... The ISME journal 13 (6), 1618-1634, 2019 | 20 | 2019 |
| Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria PBM Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, I Sharon, ... Nature communications 10 (1), 1-15, 2019 | 20 | 2019 |
| Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems RM Dedrick, TN Mavrich, WL Ng, JC Cervantes Reyes, MR Olm, RE Rush, ... Molecular microbiology 101 (4), 625-644, 2016 | 18 | 2016 |
| The source and evolutionary history of a microbial contaminant identified through soil metagenomic analysis MR Olm, CN Butterfield, A Copeland, TC Boles, BC Thomas, JF Banfield MBio 8 (1), 2017 | 12 | 2017 |
| Consistent metagenome-derived metrics verify and delineate bacterial species boundaries MR Olm, A Crits-Christoph, S Diamond, A Lavy, PBM Carnevali, ... Msystems 5 (1), 2020 | 8* | 2020 |
| InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains MR Olm, A Crits-Christoph, K Bouma-Gregson, B Firek, M Morowitz, ... BioRxiv, 2020 | 4 | 2020 |
| Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield The ISME Journal, 1-13, 2020 | 3* | 2020 |
| Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut Y Sher, MR Olm, T Raveh-Sadka, CT Brown, R Sher, B Firek, R Baker, ... Plos one 15 (3), e0229537, 2020 | 2 | 2020 |
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
