John Quackenbush

Cited by

	All	Since 2018
Citations	93608	26957
h-index	110	64
i10-index	310	215

6000

3000

1500

4500

199719981999200020012002200320042005200620072008200920102011201220132014201520162017201820192020202120222023246 946 1013 987 1507 2112 2807 3318 3733 4206 4327 3907 3731 3763 3894 4308 4200 4104 4185 4323 4105 4069 4481 4707 5050 4666 3926

Public access

View all

203 articles

2 articles

available

not available

Based on funding mandates

Co-authors

Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Joseph A. WhiteDana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Hugo AertsDirector AI in Medicine (AIM) @ Harvard-MGB | Professor @ MaastrichtUVerified email at dfci.harvard.edu
Kimberly GlassAssociate Scientist, Brigham and Women's Hospital; Assistant Professor of Medicine, Harvard MedicalVerified email at channing.harvard.edu
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
Aedin CulhaneUniversity of Limerick School of MedicineVerified email at ul.ie
Razvan SultanaBioinformatician, Garvan Institute, Sydney, AustraliaVerified email at garvan.org.au
Christian StoeckertReseach Professor of Genetics, University of PennsylvaniaVerified email at upenn.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentVerified email at jhu.edu
Helen CaustonColumbia UniversityVerified email at cumc.columbia.edu
marieke kuijjerUniversity of OsloVerified email at ncmm.uio.no
Helen ParkinsonEuropean Bioinformatics Institute - Head of Knowledge Management Section, Team LeaderVerified email at ebi.ac.uk
Ronald TaylorSupervisory Biologist (Bioinformatics) at the National Cancer InstituteVerified email at nih.gov
Chintan ParmarPathAI (Current) | [Novartis, Harvard-DFCI-BWH, ISI-Kolkata] (Previous)Verified email at dfci.harvard.edu
Ed SilvermanVerified email at channing.harvard.edu
Paul SpellmanUniversity of California Los AngelesVerified email at mednet.ucla.edu
Gavin SherlockProfessor of Genetics, Stanford UniversityVerified email at stanford.edu
John PlatigAssistant Prof. University of VirginiaVerified email at virginia.edu
Eleanor A HoweDiamond Age Data ScienceVerified email at diamondagedatascience.com
Gianluca BontempiUniversité Libre de BruxellesVerified email at ulb.ac.be

John Quackenbush

Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber

Verified email at hsph.harvard.edu

Genomics Bioinformatics Computational Biology Functional Genomics Cancer Genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Arabidopsis Genome Initiative genomeanalysis@ tgr. org genomeanalysis@ gsf. de nature 408 (6814), 796-815, 2000	10946	2000
TM4: a free, open-source system for microarray data management and analysis AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ... Biotechniques 34 (2), 374-378, 2003	5332	2003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001	4822	2001
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ... Nature communications 5 (1), 4006, 2014	4486	2014
The complete genome sequence of the gastric pathogen Helicobacter pylori JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ... Nature 388 (6642), 539-547, 1997	4319	1997
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	3965	2005
Microarray data normalization and transformation J Quackenbush Nature genetics 32 (4), 496-501, 2002	2812	2002
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ... Nature 390 (6660), 580-586, 1997	2561	1997
Artificial intelligence in radiology A Hosny, C Parmar, J Quackenbush, LH Schwartz, HJWL Aerts Nature Reviews Cancer 18 (8), 500-510, 2018	2363	2018
Computational analysis of microarray data J Quackenbush Nature reviews genetics 2 (6), 418-427, 2001	2187	2001
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs RIKEN Genome Exploration Research Group Phase I Team: Carninci P. 2 Hayatsu ... Nature 420 (6915), 563-573, 2002	2110	2002
Genesis: cluster analysis of microarray data A Sturn, J Quackenbush, Z Trajanoski Bioinformatics 18 (1), 207-208, 2002	2049	2002
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ... Bioinformatics 19 (5), 651-652, 2003	1909	2003
[9] TM4 microarray software suite AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ... Methods in enzymology 411, 134-193, 2006	1836	2006
The molecular portraits of breast tumors are conserved across microarray platforms Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ... BMC genomics 7 (1), 1-12, 2006	1823	2006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ... Nature 394 (6688), 101, 1998	1704*	1998
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ... Genome biology 8, 1-17, 2007	1618	2007
A gene map of the human genome GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ... Science 274 (5287), 540-546, 1996	1358	1996
A concise guide to cDNA microarray analysis P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ... Biotechniques 29 (3), 548-562, 2000	1357	2000
Multiple-laboratory comparison of microarray platforms RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ... Nature methods 2 (5), 345-350, 2005	1043	2005

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors