| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 2588 | 2019 |
| PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ... PloS one 6 (1), e15925, 2011 | 584 | 2011 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 284 | 2016 |
| Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ... Nature Genetics 53 (6), 809-816, 2021 | 244 | 2021 |
| New routes to phylogeography: a Bayesian structured coalescent approximation N De Maio, CH Wu, KM O’Reilly, D Wilson PLoS genetics 11 (8), e1005421, 2015 | 235 | 2015 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 206 | 2019 |
| SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent N De Maio, CH Wu, DJ Wilson PLoS computational biology 12 (9), e1005130, 2016 | 120 | 2016 |
| Issues with SARS-CoV-2 sequencing data N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 112 | 2020 |
| VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt Evolution 67 (12), 3573-3587, 2013 | 103 | 2013 |
| Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ... GigaScience 9 (2), giaa007, 2020 | 94 | 2020 |
| Mutation rates and selection on synonymous mutations in SARS-CoV-2 N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, ... Genome Biology and Evolution 13 (5), evab087, 2021 | 93 | 2021 |
| Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome … J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ... Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017 | 92 | 2017 |
| Stability of SARS-CoV-2 phylogenies Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ... PLoS genetics 16 (11), e1009175, 2020 | 91 | 2020 |
| Want to track pandemic variants faster? Fix the bioinformatics bottleneck EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ... Nature 591 (7848), 30-33, 2021 | 90 | 2021 |
| A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages S Dellicour, K Durkin, SL Hong, B Vanmechelen, J Martí-Carreras, MS Gill, ... Molecular biology and evolution 38 (4), 1608-1613, 2021 | 89 | 2021 |
| PoMo: an allele frequency-based approach for species tree estimation N De Maio, D Schrempf, C Kosiol Systematic biology 64 (6), 1018-1031, 2015 | 80 | 2015 |
| Genomic reconstruction of the SARS-CoV-2 epidemic in England HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... Nature 600 (7889), 506-511, 2021 | 78 | 2021 |
| Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models N De Maio, C Schlötterer, C Kosiol Molecular biology and evolution 30 (10), 2249-2262, 2013 | 76 | 2013 |
| Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system J Crispell, CH Benton, D Balaz, N De Maio, A Ahkmetova, A Allen, R Biek, ... Elife 8, e45833, 2019 | 73 | 2019 |
| Reversible polymorphism-aware phylogenetic models and their application to tree inference D Schrempf, BQ Minh, N De Maio, A von Haeseler, C Kosiol Journal of theoretical biology 407, 362-370, 2016 | 73 | 2016 |
Daniel J WilsonUniversity of OxfordVerified email at bdi.ox.ac.uk
