Jesper Ferkinghoff-Borg

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Thomas HamelryckDpt. of computer science / Dpt. of biology, University of CopenhagenEmail confirmado em binf.ku.dk
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenEmail confirmado em di.ku.dk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Email confirmado em dtu.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenEmail confirmado em bio.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDEmail confirmado em leeds.ac.uk
Mogens H. JensenProfessor of Complex Systems, Niels Bohr InstituteEmail confirmado em nbi.dk
Dr. Rune LindingHumboldt-Universität zu BerlinEmail confirmado em hu-berlin.de
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayEmail confirmado em uni.no
Sandro BottaroPeptoneEmail confirmado em peptone.io
Thomas SamsTechnical University of DenmarkEmail confirmado em dtu.dk
Poul OlesenEmeritus Professor of Theoretical Physics, Niels Bohr InstituteEmail confirmado em nbi.dk
Kim SneppenProfessor at Niels Bohr Institute, Copenhagen UniversityEmail confirmado em nbi.dk
Simon OlssonAssistant Professor, Chalmers University of TechnologyEmail confirmado em chalmers.se
Guido TianaUniversity of MilanoEmail confirmado em unimi.it
Pengfei TianProtein Design ScientistEmail confirmado em nih.gov
Kristoffer Enøe JohanssonDepartment of Biology, University of CopenhagenEmail confirmado em bio.ku.dk
Michael GivskovProfessor of Microbiology, Costerton Biofilm Center ISIM, University of CopenhagenEmail confirmado em sund.ku.dk
Thomas BjarnsholtProfessor in Biofilms and Chronic InfectionsEmail confirmado em sund.ku.dk
Tim HarderResearch Scientist at Philips ResearchEmail confirmado em philips.com
Pedro BeltraoAssociate Professor, ETH ZurichEmail confirmado em ethz.ch

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Jesper Ferkinghoff-Borg

Associate Professor, Research Director, Novo Nordisk A/S

Email confirmado em novonordisk.com

Machine Learning Deep Learning protein dynamics - protein interaction networks - cellular communication - automatisation


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
The FoldX web server: an online force field J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano Nucleic acids research 33 (suppl_2), W382-W388, 2005	2430	2005
Prediction of water and metal binding sites and their affinities by using the Fold-X force field JWH Schymkowitz, F Rousseau, IC Martins, J Ferkinghoff-Borg, F Stricher, ... Proceedings of the National Academy of Sciences 102 (29), 10147-10152, 2005	390	2005
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	194	2008
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs J Reumers, J Schymkowitz, J Ferkinghoff-Borg, F Stricher, L Serrano, ... Nucleic acids research 33 (suppl_1), D527-D532, 2005	184	2005
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks M Ander, P Beltrao, B Di Ventura, J Ferkinghoff-Borg, M Foglierini, ... Systems biology 1 (1), 129-138, 2004	182	2004
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling P Creixell, EM Schoof, CD Simpson, J Longden, CJ Miller, HJ Lou, ... Cell 163 (1), 202-217, 2015	181	2015
Combining experiments and simulations using the maximum entropy principle W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen PLoS computational biology 10 (2), e1003406, 2014	178	2014
Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations C Kiel, S Wohlgemuth, F Rousseau, J Schymkowitz, J Ferkinghoff-Borg, ... Journal of molecular biology 348 (3), 759-775, 2005	126	2005
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	121	2009
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	97	2010
Similarity measures for protein ensembles K Lindorff-Larsen, J Ferkinghoff-Borg PloS one 4 (1), e4203, 2009	80	2009
Experimental parameterization of an energy function for the simulation of unfolded proteins AB Norgaard, J Ferkinghoff-Borg, K Lindorff-Larsen Biophysical journal 94 (1), 182-192, 2008	71	2008
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11 (1), 1-14, 2010	65	2010
Quorum sensing regulation in Aeromonas hydrophila C Garde, T Bjarnsholt, M Givskov, TH Jakobsen, M Hentzer, A Claussen, ... Journal of molecular biology 396 (4), 849-857, 2010	55	2010
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	54	2012
Stop-and-go kinetics in amyloid fibrillation J Ferkinghoff-Borg, J Fonslet, CB Andersen, S Krishna, S Pigolotti, H Yagi, ... Physical Review E 82 (1), 010901, 2010	54	2010
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm IE Sánchez, P Beltrao, F Stricher, J Schymkowitz, J Ferkinghoff-Borg, ... PLoS computational biology 4 (4), e1000052, 2008	50	2008
Optimized Monte Carlo analysis for generalized ensembles J Ferkinghoff-Borg The European Physical Journal B-Condensed Matter and Complex Systems 29, 481-484, 2002	49	2002
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	47	2013
Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure T Lenaerts, J Ferkinghoff-Borg, F Stricher, L Serrano, JWH Schymkowitz, ... BMC structural biology 8, 1-15, 2008	42	2008

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