Jesper Ferkinghoff-Borg

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Thomas HamelryckDpt. of computer science / Dpt. of biology, University of CopenhagenEmail confirmado em binf.ku.dk
Wouter BoomsmaAssociate Professor, Department of Computer Science, University of CopenhagenEmail confirmado em di.ku.dk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Email confirmado em dtu.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenEmail confirmado em bio.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDEmail confirmado em leeds.ac.uk
Mogens H. JensenProfessor of Complex Systems, Niels Bohr InstituteEmail confirmado em nbi.dk
Dr. Rune LindingHumboldt-Universität zu BerlinEmail confirmado em hu-berlin.de
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayEmail confirmado em uni.no
Sandro BottaroHumanitas University & IRCCS Humanitas Research HospitalEmail confirmado em hunimed.eu
Poul OlesenEmeritus Professor of Theoretical Physics, Niels Bohr InstituteEmail confirmado em nbi.dk
Thomas SamsTechnical University of DenmarkEmail confirmado em dtu.dk
Kim SneppenProfessor at Niels Bohr Institute, Copenhagen UniversityEmail confirmado em nbi.dk
Simon OlssonAssistant Professor, Chalmers University of TechnologyEmail confirmado em chalmers.se
Guido TianaUniversity of MilanoEmail confirmado em unimi.it
Pengfei TianProtein Design ScientistEmail confirmado em nih.gov
Kristoffer Enøe JohanssonDepartment of Pharmacy, University of CopenhagenEmail confirmado em sund.ku.dk
Tim HarderResearch Scientist at Philips ResearchEmail confirmado em philips.com
Pedro BeltraoAssociate Professor, ETH ZurichEmail confirmado em ethz.ch
Thomas R. CoxGarvan Institute of Medical ResearchEmail confirmado em garvan.org.au
Michael GivskovProfessor of Microbiology, University of CopenhagenEmail confirmado em sund.ku.dk

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Jesper Ferkinghoff-Borg

Associate Professor, Research Director, Novo Nordisk A/S

Email confirmado em novonordisk.com

Machine Learning Deep Learning protein dynamics - protein interaction networks - cellular communication - automatisation


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
The FoldX web server: an online force field J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano Nucleic acids research 33 (suppl_2), W382-W388, 2005	2119	2005
Prediction of water and metal binding sites and their affinities by using the Fold-X force field JWH Schymkowitz, F Rousseau, IC Martins, J Ferkinghoff-Borg, F Stricher, ... Proceedings of the National Academy of Sciences 102 (29), 10147-10152, 2005	376	2005
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	185	2008
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks M Ander, P Beltrao, B Di Ventura, J Ferkinghoff-Borg, M Foglierini, ... Systems biology 1 (1), 129-138, 2004	177	2004
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs J Reumers, J Schymkowitz, J Ferkinghoff-Borg, F Stricher, L Serrano, ... Nucleic acids research 33 (suppl_1), D527-D532, 2005	175	2005
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling P Creixell, EM Schoof, CD Simpson, J Longden, CJ Miller, HJ Lou, ... Cell 163 (1), 202-217, 2015	167	2015
Combining experiments and simulations using the maximum entropy principle W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen PLoS computational biology 10 (2), e1003406, 2014	160	2014
Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations C Kiel, S Wohlgemuth, F Rousseau, J Schymkowitz, J Ferkinghoff-Borg, ... Journal of molecular biology 348 (3), 759-775, 2005	131	2005
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	112	2009
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	90	2010
Similarity measures for protein ensembles K Lindorff-Larsen, J Ferkinghoff-Borg PloS one 4 (1), e4203, 2009	70	2009
Experimental parameterization of an energy function for the simulation of unfolded proteins AB Norgaard, J Ferkinghoff-Borg, K Lindorff-Larsen Biophysical journal 94 (1), 182-192, 2008	61	2008
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11 (1), 1-14, 2010	60	2010
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	53	2012
Quorum sensing regulation in Aeromonas hydrophila C Garde, T Bjarnsholt, M Givskov, TH Jakobsen, M Hentzer, A Claussen, ... Journal of molecular biology 396 (4), 849-857, 2010	53	2010
Stop-and-go kinetics in amyloid fibrillation J Ferkinghoff-Borg, J Fonslet, CB Andersen, S Krishna, S Pigolotti, H Yagi, ... Physical Review E 82 (1), 010901, 2010	51	2010
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm IE Sánchez, P Beltrao, F Stricher, J Schymkowitz, J Ferkinghoff-Borg, ... PLoS computational biology 4 (4), e1000052, 2008	50	2008
Optimized Monte Carlo analysis for generalized ensembles J Ferkinghoff-Borg The European Physical Journal B-Condensed Matter and Complex Systems 29 (3 …, 2002	48	2002
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	45	2013
Probabilistic determination of native state ensembles of proteins S Olsson, BR Vögeli, A Cavalli, W Boomsma, J Ferkinghoff-Borg, ... Journal of Chemical Theory and Computation 10 (8), 3484-3491, 2014	42	2014

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