Jesper Ferkinghoff-Borg

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	Todos	Desde 2015
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Thomas HamelryckBioinformatics center, University of CopenhagenEmail confirmado em binf.ku.dk
Luis SerranoProfesor de cine, Imagen y Sonido Email confirmado em eiso.es
Wouter BoomsmaAssociate Professor, Department of Computer Science, University of CopenhagenEmail confirmado em di.ku.dk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Email confirmado em dtu.dk
Mogens H. JensenProfessor of Complex Systems, Niels Bohr InstituteEmail confirmado em nbi.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenEmail confirmado em bio.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDEmail confirmado em leeds.ac.uk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayEmail confirmado em uni.no
Sandro BottaroUniversity of CopenhagenEmail confirmado em bio.ku.dk
Dr. Rune LindingHumboldt-Universität zu BerlinEmail confirmado em hu-berlin.de
Poul OlesenEmeritus Professor of Theoretical Physics, Niels Bohr InstituteEmail confirmado em nbi.dk
Thomas SamsTechnical University of DenmarkEmail confirmado em dtu.dk
Simon OlssonAssistant Professor, Chalmers University of TechnologyEmail confirmado em chalmers.se
Kim SneppenProfessor at Niels Bohr Institute, Copenhagen UniversityEmail confirmado em nbi.dk
Guido TianaUniversity of MilanoEmail confirmado em unimi.it
Pengfei TianProtein Design Scientist at Novozymes A/SEmail confirmado em nih.gov
Pedro BeltraoGroup Leader, EMBL-EBIEmail confirmado em ebi.ac.uk
Tim HarderResearch Scientist at Philips ResearchEmail confirmado em philips.com
Kristoffer Enøe JohanssonDepartment of Pharmacy, University of CopenhagenEmail confirmado em sund.ku.dk
Michael GivskovProfessor of Microbiology, University of CopenhagenEmail confirmado em sund.ku.dk

Jesper Ferkinghoff-Borg

Associate Professor, Principal Scientist, Novo Nordisk A/S

Email confirmado em novonordisk.com

Machine Learning Deep Learning protein dynamics - protein interaction networks - cellular communication - automatisation


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
The FoldX web server: an online force field J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano Nucleic acids research 33 (suppl_2), W382-W388, 2005	1516	2005
Prediction of water and metal binding sites and their affinities by using the Fold-X force field JWH Schymkowitz, F Rousseau, IC Martins, J Ferkinghoff-Borg, F Stricher, ... Proceedings of the National Academy of Sciences 102 (29), 10147-10152, 2005	336	2005
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	162	2008
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks M Ander, P Beltrao, B Di Ventura, J Ferkinghoff-Borg, M Foglierini, ... Systems biology 1 (1), 129-138, 2004	161	2004
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs J Reumers, J Schymkowitz, J Ferkinghoff-Borg, F Stricher, L Serrano, ... Nucleic acids research 33 (suppl_1), D527-D532, 2005	160	2005
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling P Creixell, EM Schoof, CD Simpson, J Longden, CJ Miller, HJ Lou, ... Cell 163 (1), 202-217, 2015	135	2015
Combining experiments and simulations using the maximum entropy principle W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen PLoS Comput Biol 10 (2), e1003406, 2014	121	2014
Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations C Kiel, S Wohlgemuth, F Rousseau, J Schymkowitz, J Ferkinghoff-Borg, ... Journal of molecular biology 348 (3), 759-775, 2005	116	2005
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS Comput Biol 5 (6), e1000406, 2009	101	2009
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	77	2010
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11 (1), 429, 2010	57	2010
Quorum sensing regulation in Aeromonas hydrophila C Garde, T Bjarnsholt, M Givskov, TH Jakobsen, M Hentzer, A Claussen, ... Journal of molecular biology 396 (4), 849-857, 2010	50	2010
Experimental parameterization of an energy function for the simulation of unfolded proteins AB Norgaard, J Ferkinghoff-Borg, K Lindorff-Larsen Biophysical journal 94 (1), 182-192, 2008	50	2008
Similarity measures for protein ensembles K Lindorff-Larsen, J Ferkinghoff-Borg PloS one 4 (1), e4203, 2009	47	2009
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm IE Sanchez, P Beltrao, F Stricher, J Schymkowitz, J Ferkinghoff-Borg, ... PLoS Comput Biol 4 (4), e1000052, 2008	47	2008
Optimized Monte Carlo analysis for generalized ensembles J Ferkinghoff-Borg The European Physical Journal B-Condensed Matter and Complex Systems 29 (3 …, 2002	46	2002
Stop-and-go kinetics in amyloid fibrillation J Ferkinghoff-Borg, J Fonslet, CB Andersen, S Krishna, S Pigolotti, H Yagi, ... Physical Review E 82 (1), 010901, 2010	44	2010
Probabilistic determination of native state ensembles of proteins S Olsson, BR Vögeli, A Cavalli, W Boomsma, J Ferkinghoff-Borg, ... Journal of Chemical Theory and Computation 10 (8), 3484-3491, 2014	39	2014
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	38	2012
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	36	2013

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