Robert Hoehndorf
Title
Cited by
Cited by
Year
Text-mining solutions for biomedical research: enabling integrative biology
D Rebholz-Schuhmann, A Oellrich, R Hoehndorf
Nature Reviews Genetics 13 (12), 829-839, 2012
2322012
PhenomeNET: a whole-phenome approach to disease gene discovery
R Hoehndorf, PN Schofield, GV Gkoutos
Nucleic acids research 39 (18), e119-e119, 2011
2122011
The role of ontologies in biological and biomedical research: a functional perspective
R Hoehndorf, PN Schofield, GV Gkoutos
Briefings in bioinformatics 16 (6), 1069-1080, 2015
2032015
DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier
M Kulmanov, MA Khan, R Hoehndorf
Bioinformatics 34 (4), 660-668, 2017
1842017
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
M Dumontier, CJO Baker, J Baran, A Callahan, L Chepelev, ...
Journal of biomedical semantics 5 (1), 1-11, 2014
1572014
General Formal Ontology (GFO): A foundational ontology integrating objects and processes
H Herre, B Heller, P Burek, R Hoehndorf, F Loebe, H Michalek
Onto-Med Report 8, 53, 2006
1222006
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
1152019
Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics
MH de Angelis, G Nicholson, M Selloum, JK White, H Morgan, ...
Nature genetics 47 (9), 969-978, 2015
1112015
Evaluation of research in biomedical ontologies
R Hoehndorf, M Dumontier, GV Gkoutos
Briefings in bioinformatics 14 (6), 696-712, 2013
972013
Neuro-symbolic representation learning on biological knowledge graphs
M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ...
Bioinformatics 33 (17), 2723-2730, 2017
882017
The Units Ontology: a tool for integrating units of measurement in science
GV Gkoutos, PN Schofield, R Hoehndorf
Database 2012, 2012
852012
Analysis of the human diseasome using phenotype similarity between common, genetic and infectious diseases
R Hoehndorf, PN Schofield, GV Gkoutos
Scientific reports 5 (1), 1-14, 2015
832015
Aber-OWL: a framework for ontology-based data access in biology
R Hoehndorf, L Slater, PN Schofield, GV Gkoutos
BMC bioinformatics 16 (1), 1-9, 2015
792015
General Formal Ontology (GFO)--A Foundational Ontology Integrating Objects and Processes [Version 1.0]
H Herre, B Heller, P Burek, R Hoehndorf, F Loebe, H Michalek
Philosophy 19 (8), 2006
762006
Mouse genetic and phenotypic resources for human genetics
PN Schofield, R Hoehndorf, GV Gkoutos
Human mutation 33 (5), 826-836, 2012
752012
Integrating systems biology models and biomedical ontologies
R Hoehndorf, M Dumontier, JH Gennari, S Wimalaratne, B De Bono, ...
BMC systems biology 5 (1), 1-16, 2011
752011
DeepGOPlus: Improved protein function prediction from sequence
M Kulmanov, R Hoehndorf
Bioinformatics 36 (2), 422–429, 2020
722020
Representing default knowledge in biomedical ontologies: Application to the integration of anatomy and phenotype ontologies
R Hoehndorf, F Loebe, J Kelso, H Herre
BMC bioinformatics 8 (1), 1-12, 2007
722007
Relations as patterns: bridging the gap between OBO and OWL
R Hoehndorf, A Oellrich, M Dumontier, J Kelso, D Rebholz-Schuhmann, ...
BMC bioinformatics 11 (1), 1-8, 2010
712010
A top-level ontology of functions and its application in the Open Biomedical Ontologies
P Burek, R Hoehndorf, F Loebe, J Visagie, H Herre, J Kelso
Bioinformatics 22 (14), e66-e73, 2006
682006
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Articles 1–20