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Benjamin Pavie
Benjamin Pavie
Computational Biologist,VIB Image Core Facility Ghent / KU Leuven
Email confirmado em cme.vib-kuleuven.be - Página inicial
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Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer's Disease
C Wei-Ting, L Ashley, C Katleen, P Benjamin, F Carlo,Sala, C Nikky, ...
Cell 182, 2020
5452020
Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver
A Remmerie, L Martens, T Thoné, A Castoldi, R Seurinck, B Pavie, ...
Immunity 53 (3), 641-657. e14, 2020
3322020
Rabies virus P and small P products interact directly with PML and reorganize PML nuclear bodies
D Blondel, T Regad, N Poisson, B Pavie, F Harper, PP Pandolfi, H De Thé, ...
Oncogene 21 (52), 7957-7970, 2002
1982002
Damage on plants activates Ca2+-dependent metacaspases for release of immunomodulatory peptides
T Hander, ÁD Fernández-Fernández, RP Kumpf, P Willems, H Schatowitz, ...
Science 363 (6433), eaar7486, 2019
1962019
PhenoRipper: software for rapidly profiling microscopy images
S Rajaram, B Pavie, LF Wu, SJ Altschuler
Nature methods 9 (7), 635-637, 2012
1022012
SOX10 single transcription factor-based fast and efficient generation of oligodendrocytes from human pluripotent stem cells
JA García-León, M Kumar, R Boon, D Chau, J One, E Wolfs, K Eggermont, ...
Stem cell reports 10 (2), 655-672, 2018
1012018
A cellular hierarchy in melanoma uncouples growth and metastasis
P Karras, I Bordeu, J Pozniak, A Nowosad, C Pazzi, N Van Raemdonck, ...
Nature 610 (7930), 190-198, 2022
872022
SimuCell: a flexible framework for creating synthetic microscopy images
S Rajaram, B Pavie, NEF Hac, SJ Altschuler, LF Wu
Nature methods 9 (7), 634-635, 2012
612012
Human motor units in microfluidic devices are impaired by FUS mutations and improved by HDAC6 inhibition
KS Dittlau, EN Krasnow, L Fumagalli, T Vandoorne, P Baatsen, ...
Stem Cell Reports 16 (9), 2213-2227, 2021
522021
Modernization of Golgi staining techniques for high-resolution, 3-dimensional imaging of individual neurons
K Vints, D Vandael, P Baatsen, B Pavie, F Vernaillen, N Corthout, ...
Scientific reports 9 (1), 130, 2019
472019
The ORMDL3 asthma susceptibility gene regulates systemic ceramide levels without altering key asthma features in mice
N Debeuf, A Zhakupova, R Steiner, S Van Gassen, K Deswarte, ...
Journal of Allergy and Clinical Immunology 144 (6), 1648-1659. e9, 2019
432019
BIAFLOWS: A collaborative framework to reproducibly deploy and benchmark bioimage analysis workflows
U Rubens, R Mormont, L Paavolainen, V Bäcker, B Pavie, LA Scholz, ...
Patterns 1 (3), 2020
312020
Visualizing protein–protein interactions in plants by rapamycin-dependent delocalization
J Winkler, E Mylle, A De Meyer, B Pavie, J Merchie, P Grones, ...
The Plant Cell 33 (4), 1101-1117, 2021
302021
An in situ sequencing approach maps PLASTOCHRON1 at the boundary between indeterminate and determinate cells
R Laureyns, J Joossens, D Herwegh, J Pevernagie, B Pavie, K Demuynck, ...
Plant Physiology 188 (2), 782-794, 2022
262022
A semi-automated method for unbiased alveolar morphometry: Validation in a bronchopulmonary dysplasia model
T Salaets, B Tack, A Gie, B Pavie, N Sindhwani, J Jimenez, Y Regin, ...
Plos one 15 (9), e0239562, 2020
212020
Three-dimensional reconstruction of the intercalated disc including the intercellular junctions by applying volume scanning electron microscopy
B Vanslembrouck, A Kremer, B Pavie, F Van Roy, S Lippens, ...
Histochemistry and cell biology 149, 479-490, 2018
202018
Lalá ková, J., Kühnemund, M., Voytyuk, I., et al.(2020). Spatial transcriptomics and in situ sequencing to study alzheimer’s disease
WT Chen, A Lu, K Craessaerts, B Pavie, C Sala Frigerio, N Corthout, ...
Cell 182, 976-991, 0
20
Excess LINC complexes impair brain morphogenesis in a mouse model of recessive TOR1A disease
B Dominguez Gonzalez, K Billion, S Rous, B Pavie, C Lange, ...
Human molecular genetics 27 (12), 2154-2170, 2018
182018
Spatial and temporal transcriptomics reveal microglia-astroglia crosstalk in the amyloid-β plaque cell niche of Alzheimer’s disease
WT Chen, A Lu, K Craessaerts, B Pavie, C Sala Frigerio, R Mancuso, ...
BioRxiv, 719930, 2019
152019
Inhomogeneity based characterization of distribution patterns on the plasma membrane
L Paparelli, N Corthout, B Pavie, DL Wakefield, R Sannerud, ...
PLOS Computational Biology 12 (9), e1005095, 2016
152016
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