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Dr. Joana C. Xavier
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Year
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
1722020
The last universal common ancestor between ancient Earth chemistry and the onset of genetics
MC Weiss, M Preiner, JC Xavier, V Zimorski, WF Martin
PLoS genetics 14 (8), e1007518, 2018
962018
Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes
JC Xavier, KR Patil, I Rocha
Metabolic engineering 39, 200-208, 2017
712017
Systems biology perspectives on minimal and simpler cells
JC Xavier, KR Patil, I Rocha
Microbiology and Molecular Biology Reviews 78 (3), 487-509, 2014
622014
Autocatalytic chemical networks at the origin of metabolism
JC Xavier, W Hordijk, S Kauffman, M Steel, WF Martin
Proceedings of the Royal Society B 287 (1922), 20192377, 2020
602020
The Future of Origin of Life Research: Bridging Decades-Old Divisions
M Preiner, S Asche, S Becker, HC Betts, A Boniface, E Camprubi, ...
Life 10 (3), 20, 2020
572020
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
542018
Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation
M Preiner, JC Xavier, F Sousa, V Zimorski, A Neubeck, S Lang, ...
Life 8 (4), 41, 2018
442018
Autocatalytic networks in biology: structural theory and algorithms
M Steel, W Hordijk, JC Xavier
Journal of the Royal Society Interface 16 (151), 20180808, 2019
312019
Catalysts, autocatalysis and the origin of metabolism
M Preiner, JC Xavier, AN Vieira, K Kleinermanns, JF Allen, WF Martin
Interface Focus 9 (6), 20190072, 2019
282019
Something special about CO‐dependent CO 2 fixation
JC Xavier, M Preiner, WF Martin
The FEBS Journal, 2018
242018
Gene duplications trace mitochondria to the onset of eukaryote complexity
FDK Tria, J Brueckner, J Skejo, JC Xavier, N Kapust, M Knopp, ...
Genome Biology and Evolution 13 (5), evab055, 2021
162021
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes
JC Xavier, KR Patil, I Rocha
PLOS Computational Biology 14 (11), e1006556, 2018
152018
The metabolic network of the last bacterial common ancestor
JC Xavier, RE Gerhards, JLE Wimmer, J Brueckner, FDK Tria, WF Martin
Communications Biology 4 (1), 1-10, 2021
142021
Autocatalytic chemical networks preceded proteins and RNA in evolution
JC Xavier, W Hordijk, S Kauffman, M Steel, WF Martin
bioRxiv, 693879, 2019
102019
The Autotrophic Core: An Ancient Network of 404 Reactions Converts H2, CO2, and NH3 into Amino Acids, Bases, and Cofactors
JLE Wimmer, AN Vieira, JC Xavier, K Kleinermanns, WF Martin, M Preiner
Microorganisms 9 (2), 458, 2021
82021
Energy at Origins: Favorable Thermodynamics of Biosynthetic Reactions in the Last Universal Common Ancestor (LUCA)
JLE Wimmer, JC Xavier, AN Vieira, DPH Pereira, J Leidner, FL Sousa, ...
Frontiers in Microbiology, 3903, 2021
72021
The structure of autocatalytic networks, with application to early biochemistry
M Steel, JC Xavier, DH Huson
Journal of the Royal Society Interface 17 (171), 20200488, 2020
52020
Failure to recover major events of gene flux in real biological data due to method misapplication
N Kapust, S Nelson-Sathi, B Schönfeld, E Hazkani-Covo, D Bryant, ...
Genome biology and evolution 10 (5), 1198-1209, 2018
42018
Elusive data underlying debate at the prokaryote-eukaryote divide
M Gerlitz, M Knopp, N Kapust, JC Xavier, WF Martin
Biology direct 13 (1), 1-12, 2018
32018
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Articles 1–20