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Umberto Perron
Umberto Perron
Senior Computational Biologist at Omniscope
Verified email at omniscope.ai - Homepage
Title
Cited by
Cited by
Year
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk
A Kalkauskas, U Perron, Y Sun, N Goldman, G Baele, S Guindon, ...
PLOS Computational Biology 17 (1), e1008561, 2021
592021
In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression
U Perron, P Provero, I Molineris
BMC bioinformatics 18, 29-39, 2017
482017
CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens
A Vinceti, E Karakoc, C Pacini, U Perron, RR De Lucia, MJ Garnett, F Iorio
BMC genomics 22, 1-16, 2021
152021
Modeling structural constraints on protein evolution via side-chain conformational states
U Perron, AM Kozlov, A Stamatakis, N Goldman, IH Moal
Molecular biology and evolution 36 (9), 2086-2103, 2019
142019
Probabilistic models for the study of protein evolution
U Perron, IH Moal, JL Thorne, N Goldman
Handbook of Statistical Genomics: Two Volume Set, 347-30, 2019
62019
Reduced gene templates for supervised analysis of scale-limited CRISPR-Cas9 fitness screens
A Vinceti, U Perron, L Trastulla, F Iorio
Cell Reports 40 (4), 2022
42022
An interactive web application for processing, correcting, and visualizing genome-wide pooled CRISPR-Cas9 screens
A Vinceti, RR De Lucia, P Cremaschi, U Perron, E Karakoc, L Mauri, ...
Cell Reports Methods 3 (1), 2023
22023
Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space
CC Weber, U Perron, D Casey, Z Yang, N Goldman
Systematic Biology 70 (1), 21-32, 2021
22021
A heuristic algorithm solving the mutual-exclusivity-sorting problem
A Vinceti, L Trastulla, U Perron, A Raiconi, F Iorio
Bioinformatics 39 (1), btad016, 2023
12023
Redefining false discoveries in cancer data analyses
H Najgebauer, U Perron, F Iorio
Nature Computational Science 1 (1), 22-23, 2021
12021
Integrative ensemble modelling of cetuximab sensitivity in colorectal cancer PDXs
U Perron, E Grassi, A Chatzipli, M Viviani, E Karakoc, L Trastulla, C Isella, ...
bioRxiv, 2023.01. 24.525314, 2023
2023
CRISPRcleanRWebApp: an interactive web application for processing genome-wide pooled CRISPR-Cas9 viability screens
A Vinceti, RR De Lucia, P Cremaschi, U Perron, E Karacok, L Mauri, ...
bioRxiv, 2022.03. 11.483924, 2022
2022
CoRe: A robustly benchmarked R package for the identification of core fitness genes in genome-wide pooled CRISPR knock-out screens
A Vinceti, E Karakoc, C Pacini, U Perron, RR De Lucia, MJ Garnett, F Iorio
bioRxiv, 2021.05. 25.445610, 2021
2021
The Influence of Structural Constraints on Protein Evolution
U Perron
2020
Modelling structural constraints on protein evolution
U Perron, AM Kozlov, A Stamatakis, N Goldman, IH Moal
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