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Joel P. Arrais
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Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
G Moura, M Pinheiro, J Arrais, AC Gomes, L Carreto, A Freitas, JL Oliveira, ...
Plos one 2 (9), e847, 2007
1222007
From the salivary proteome to the OralOme: comprehensive molecular oral biology
N Rosa, MJ Correia, JP Arrais, P Lopes, J Melo, JL Oliveira, M Barros
Archives of oral biology 57 (7), 853-864, 2012
922012
Parallel DNA pyrosequencing unveils new zebrafish microRNAs
AR Soares, PM Pereira, B Santos, C Egas, AC Gomes, J Arrais, ...
Bmc Genomics 10, 1-15, 2009
872009
Diversity oriented deep reinforcement learning for targeted molecule generation
T Pereira, M Abbasi, B Ribeiro, JP Arrais
Journal of cheminformatics 13 (1), 21, 2021
602021
Concept-based query expansion for retrieving gene related publications from MEDLINE
S Matos, JP Arrais, J Maia-Rodrigues, JL Oliveira
BMC bioinformatics 11, 1-9, 2010
582010
OralCard: a bioinformatic tool for the study of oral proteome
JP Arrais, N Rosa, J Melo, ED Coelho, D Amaral, MJ Correia, M Barros, ...
Archives of oral biology 58 (7), 762-772, 2013
512013
Computational prediction of the human-microbial oral interactome
ED Coelho, JP Arrais, S Matos, C Pereira, N Rosa, MJ Correia, M Barros, ...
BMC systems biology 8, 1-12, 2014
472014
Computational discovery of putative leads for drug repositioning through drug-target interaction prediction
ED Coelho, JP Arrais, JL Oliveira
PLoS computational biology 12 (11), e1005219, 2016
412016
Drug-target interaction prediction: end-to-end deep learning approach
NRC Monteiro, B Ribeiro, JP Arrais
IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2020
392020
Designing optimized drug candidates with Generative Adversarial Network
M Abbasi, BP Santos, TC Pereira, R Sofia, NRC Monteiro, CJV Simões, ...
Journal of cheminformatics 14 (1), 40, 2022
302022
From protein-protein interactions to rational drug design: are computational methods up to the challenge?
E D Coelho, J P Arrais, J Luis Oliveira
Current topics in medicinal chemistry 13 (5), 602-618, 2013
262013
DTITR: End-to-end drug–target binding affinity prediction with transformers
NRC Monteiro, JL Oliveira, JP Arrais
Computers in Biology and Medicine 147, 105772, 2022
252022
The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning
N Rosa, MJ Correia, JP Arrais, N Costa, JL Oliveira, M Barros
BioMed Research International 2014, 2014
252014
The road to personalized medicine in Alzheimer’s disease: The use of artificial intelligence
A Silva-Spínola, I Baldeiras, JP Arrais, I Santana
Biomedicines 10 (2), 315, 2022
242022
New targets for Zika virus determined by human-viral interactomic: a bioinformatics approach
E Esteves, N Rosa, MJ Correia, JP Arrais, M Barros
BioMed Research International 2017, 2017
212017
GeNS: a biological data integration platform
J Arrais, JE Pereira, J Fernandes, JL Oliveira
International Journal of Computer and Information Engineering 3 (10), 2443-2448, 2009
202009
Interactive and coordinated visualization approaches for biological data analysis
A Cruz, JP Arrais, P Machado
Briefings in bioinformatics 20 (4), 1513-1523, 2019
192019
Deep learning in digital marketing: brand detection and emotion recognition
B Ribeiro, G Oliveira, A Laranjeira, JP Arrais
International Journal of Machine Intelligence and Sensory Signal Processing …, 2017
182017
Optimizing blood–brain barrier permeation through deep reinforcement learning for de novo drug design
T Pereira, M Abbasi, JL Oliveira, B Ribeiro, J Arrais
Bioinformatics 37 (Supplement_1), i84-i92, 2021
162021
GeneBrowser: an approach for integration and functional classification of genomic data
J Arrais, B Santos, J Fernandes, L Carreto, MAS Santos, JL Oliveira
Journal of Integrative Bioinformatics 4 (3), 264-273, 2007
162007
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Articles 1–20