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Joel P. Arrais
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Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
G Moura, M Pinheiro, J Arrais, AC Gomes, L Carreto, A Freitas, JL Oliveira, ...
Plos one 2 (9), e847, 2007
1132007
From the salivary proteome to the OralOme: comprehensive molecular oral biology
N Rosa, MJ Correia, JP Arrais, P Lopes, J Melo, JL Oliveira, M Barros
Archives of oral biology 57 (7), 853-864, 2012
852012
Parallel DNA pyrosequencing unveils new zebrafish microRNAs
AR Soares, PM Pereira, B Santos, C Egas, AC Gomes, J Arrais, ...
Bmc Genomics 10 (1), 1-15, 2009
852009
Concept-based query expansion for retrieving gene related publications from MEDLINE
S Matos, JP Arrais, J Maia-Rodrigues, JL Oliveira
BMC bioinformatics 11 (1), 1-9, 2010
562010
OralCard: a bioinformatic tool for the study of oral proteome
JP Arrais, N Rosa, J Melo, ED Coelho, D Amaral, MJ Correia, M Barros, ...
Archives of oral biology 58 (7), 762-772, 2013
442013
Computational prediction of the human-microbial oral interactome
ED Coelho, JP Arrais, S Matos, C Pereira, N Rosa, MJ Correia, M Barros, ...
BMC systems biology 8 (1), 1-12, 2014
402014
Computational discovery of putative leads for drug repositioning through drug-target interaction prediction
ED Coelho, JP Arrais, JL Oliveira
PLoS computational biology 12 (11), e1005219, 2016
352016
Diversity oriented deep reinforcement learning for targeted molecule generation
T Pereira, M Abbasi, B Ribeiro, JP Arrais
Journal of cheminformatics 13 (1), 1-17, 2021
222021
Drug-target interaction prediction: end-to-end deep learning approach
NRC Monteiro, B Ribeiro, J Arrais
IEEE/ACM transactions on computational biology and bioinformatics, 2020
212020
From protein-protein interactions to rational drug design: are computational methods up to the challenge?
E D Coelho, J P Arrais, J Luis Oliveira
Current topics in medicinal chemistry 13 (5), 602-618, 2013
212013
New targets for Zika virus determined by human-viral interactomic: a bioinformatics approach
E Esteves, N Rosa, MJ Correia, JP Arrais, M Barros
BioMed Research International 2017, 2017
202017
GeNS: a biological data integration platform
J Arrais, JE Pereira, J Fernandes, JL Oliveira
International Journal of Computer and Information Engineering 3 (10), 2443-2448, 2009
202009
The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning
N Rosa, MJ Correia, JP Arrais, N Costa, JL Oliveira, M Barros
BioMed Research International 2014, 2014
192014
Interactive and coordinated visualization approaches for biological data analysis
A Cruz, JP Arrais, P Machado
Briefings in bioinformatics 20 (4), 1513-1523, 2019
172019
GeneBrowser: an approach for integration and functional classification of genomic data
J Arrais, B Santos, J Fernandes, L Carreto, MAS Santos, JL Oliveira
Journal of Integrative Bioinformatics 4 (3), 264-273, 2007
162007
Reconstructing the temporal progression of HIV-1 immune response pathways
S Jain, J Arrais, NJ Venkatachari, V Ayyavoo, Z Bar-Joseph
Bioinformatics 32 (12), i253-i261, 2016
142016
CanisOme—The protein signatures of Canis lupus familiaris diseases
M Fernandes, N Rosa, E Esteves, MJ Correia, J Arrais, P Ribeiro, H Vala, ...
Journal of proteomics 136, 193-201, 2016
132016
Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE)
SC Novais, J Arrais, P Lopes, T Vandenbrouck, W De Coen, D Roelofs, ...
PLoS One 7 (4), e34266, 2012
122012
Deep neural network architecture for drug-target interaction prediction
NRC Monteiro, B Ribeiro, JP Arrais
International Conference on Artificial Neural Networks, 804-809, 2019
102019
Computational methodology for predicting the landscape of the human–microbial interactome region level influence
ED Coelho, AM Santiago, JP Arrais, JL Oliveira
Journal of bioinformatics and computational biology 13 (05), 1550023, 2015
102015
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Articles 1–20