Jose Ignacio Garzon
Jose Ignacio Garzon
Department of Systems Biology, Columbia University
Verified email at columbia.edu
Title
Cited by
Cited by
Year
PrePPI: a structure-informed database of protein–protein interactions
QC Zhang, D Petrey, JI Garzón, L Deng, B Honig
Nucleic acids research 41 (D1), D828-D833, 2012
2112012
FRODOCK: a new approach for fast rotational protein–protein docking
JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs, R Abagyan, ...
Bioinformatics 25 (19), 2544-2551, 2009
1302009
iMod: multipurpose normal mode analysis in internal coordinates
JR Lopéz-Blanco, JI Garzón, P Chacón
Bioinformatics 27 (20), 2843-2850, 2011
1242011
ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage
JI Garzón, J Kovacs, R Abagyan, P Chacón
Bioinformatics 23 (4), 427-433, 2007
1032007
A computational interactome and functional annotation for the human proteome
JI Garzón, L Deng, D Murray, S Shapira, D Petrey, B Honig
Elife 5, e18715, 2016
462016
Template-based prediction of protein function
D Petrey, TS Chen, L Deng, JI Garzon, H Hwang, G Lasso, H Lee, ...
Current opinion in structural biology 32, 33-38, 2015
392015
DrugScorePPI Knowledge-Based Potentials Used as Scoring and Objective Function in Protein-Protein Docking
DM Krüger, J Ignacio Garzón, P Chacón, H Gohlke
PloS one 9 (2), e89466, 2014
262014
DFprot: a webtool for predicting local chain deformability
JI Garzón, J Kovacs, R Abagyan, P Chacón
Bioinformatics 23 (7), 901-902, 2007
232007
Predicting peptide-mediated interactions on a genome-wide scale
TS Chen, D Petrey, JI Garzon, B Honig
PLoS computational biology 11 (5), e1004248, 2015
202015
DynaFace: discrimination between obligatory and non-obligatory protein-protein interactions based on the complex’s dynamics
S Soner, P Ozbek, JI Garzon, N Ben-Tal, T Haliloglu
PLoS computational biology 11 (10), e1004461, 2015
72015
Adaptation of a Multi-Resolution Docking Bioinformatics Application to the Grid.
JI Garzón, E Huedo, RS Montero, IM Llorente, P Chacón
J. Softw. 2 (2), 1-10, 2007
52007
FRODRUG: A virtual screening GPU accelerated approach for drug discovery
SG Sánchez, ER Aportela, JI Garzón, P Chacón, AS Montemayor, ...
2014 22nd Euromicro international conference on parallel, distributed, and …, 2014
42014
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics
T Haliloglu, N Ben-Tal, J Garzon, P Ozbek, S Soner
32015
Predicting protein-protein interactions with DrugScore PPI: fully-flexible docking, scoring, and in silico alanine-scanning
DM Krüger, JI Garzón, PC Montes, H Gohlke
Journal of cheminformatics 3 (1), 1-1, 2011
22011
Predicting protein-protein interactions with DrugScore PPI: fully-flexible docking, scoring, and in silico alanine-scanning
DM Krüger, JI Garzón, PC Montes, H Gohlke
Journal of cheminformatics 3 (1), 1-1, 2011
22011
End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application
J Ignacio Garzon, E Huedo, R Santiago Montero, I Martin Llorente, ...
The International Journal of High Performance Computing Applications 24 (3 …, 2010
22010
Uncovering the disorder of breast invasive carcinoma homeostasis proteins
JV Castro, EO Paull, JI Garzon, D Murray, A Califano, B Honig
Cancer Research 78 (13 Supplement), 285-285, 2018
2018
Structure-based prediction of protein-protein and protein-ligand interactions on a genomic scale
J Garzon, H Hwang, F Dey, D Murray, D Petrey, B Honig
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Predicting Protein-protein Interactions with DrugScorePPI: Docking, Scoring, and in silico Alanine-scanning
DM Kruger, JI Garzón, P Chacon, H Gohlke
From Computational Biophysics to Systems Biology (CBSB11)–Celebrating Harold …, 2012
2012
Predicting protein-protein interactions with DrugScorePPI: fully-flexible docking, scoring, and in silico alanine-scanning
JI Garzón, DM Krüger, P Chacón, H Gohlken
BioMed Central, 2011
2011
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