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Ignacio Arganda-Carreras
Ignacio Arganda-Carreras
Ikerbasque Associate Researcher at University of the Basque Country and DIPC
Verified email at ehu.eus - Homepage
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Cited by
Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature Methods 9 (7), 676–682, 2012
426492012
BoneJ: free and extensible bone image analysis in ImageJ
M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ...
Bone 47 (6), 1076-1079, 2010
18992010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ...
Bioinformatics 33 (15), 2424-2426, 2017
14172017
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
8242012
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ
D Legland, I Arganda-Carreras, P Andrey
Bioinformatics 32 (22), 3532-3534, 2016
7862016
Serial two-photon tomography for automated ex vivo mouse brain imaging
T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ...
Nature methods 9 (3), 255-258, 2012
5792012
3D reconstruction of histological sections: Application to mammary gland tissue
I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ...
Microscopy research and technique 73 (11), 1019-1029, 2010
5502010
Consistent and elastic registration of histological sections using vector-spline regularization
I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ...
Computer Vision Approaches to Medical Image Analysis: Second International …, 2006
3622006
Crowdsourcing the creation of image segmentation algorithms for connectomics
I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ...
Frontiers in neuroanatomy 9, 142, 2015
3172015
Mapping social behavior-induced brain activation at cellular resolution in the mouse
Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ...
Cell reports 10 (2), 292-305, 2015
2472015
Vision-Based Fall Detection with Convolutional Neural Networks
A Núñez-Marcos, G Azkune, I Arganda-Carreras
Wireless Communications and Mobile Computing 2017, 1-16, 2017
2102017
Deep learning on chest X-ray images to detect and evaluate pneumonia cases at the era of COVID-19
K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ...
Journal of medical systems 45 (7), 75, 2021
1292021
Pietzsch T. andPreibisch S
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair
Rueden C., Saalfeld S. Schmid B., Tinevez JY, White DJ, Hartenstein V …, 2012
982012
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy
L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ...
Nature communications 10 (1), 1662, 2019
732019
ANHIR: automatic non-rigid histological image registration challenge
J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ...
IEEE transactions on medical imaging 39 (10), 3042-3052, 2020
702020
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling
N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ...
Nature communications 5 (1), 3639, 2014
672014
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ...
The Journal of Neuroscience 30 (22), 7538-7553, 2010
632010
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei
A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout
Bioinformatics 31 (7), 1144-1146, 2015
482015
An optimized approach to perform bone histomorphometry
D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ...
Frontiers in endocrinology 9, 666, 2018
472018
MitoEM dataset: Large-scale 3D mitochondria instance segmentation from EM images
D Wei, Z Lin, D Franco-Barranco, N Wendt, X Liu, W Yin, X Huang, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2020
422020
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